Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2223 ATGAATTCGGCTCAGGGATTTAGTGATGCTTCGCTCTCCTCTCCTAAACATAAGCTTCAGCCAGCTGCATCATCAGTTCAGCTTGCTTCTCACAGTAGGAATGGTAATAAGGTTTTCAAGTGTGGGACGCTTTTCTTATCTTCCAAAGGAGGAATTGGATGGACATCATGGAAGAAAAGATGGTTTATTTTAACACAAACTTCACTTGTTTTCTTCAGAAGTGATCCAAATGGCGTTCCTCAGAAGGGAAACGAAGCTAATTTGACCCTTGGTGGCATTGACCTCAACAATTCAGGCAGTGTTTCTATCAAAGCAGATAAGAAACTTTTGACTGTACAATTTCCCAATGTTCATGATGGACGAGTATTAACACTTAAGGCTGAAACTACTGAGGATTTATATGAATGGAAAACTGCACTTGAGAATGTTTTGGCACACGCACCAAGTGCTACTAATGTGATGGGGCAAAGTGGCATCTTTAGGAGTTATCAGGCTGATTCACTCGATATTTATTTGGACCAGTTGAAGGATAAAGAAACAGTAAATTATGCAGTCCTTGGCCGGCCAATTTTACTTGCTTTGGAGGAAGTTGACGGAACTCCATCTTTTTTGGAAAAAGCCCTGAGGTTCATAGAAGAGCATGGAGCCAAAGTAGAAGGGATTTTGCGTCAAGCAGCCGATGTTGAAGATGTTGAAAATCGAGTCCGGGAATATGAACAAGGAAAAGTTGAATTTTCTGAGGGGGAGGACGCACATGTTGTTGCTGATTGTGTTAAGCATGTACTTCGTGAGTTGCGGTCTTTTCCAATCCCAGTATCTTGTTGCAAGGCGTTGTTAGCAGCTTGTCGAACTGCACGTGAGAATAGGGTTTCTGCTATGCGTACAGCAATATGTGACACTTTTCCTGAACCAAACCGCCGTTTGTTGCAAAGAATACTCTTGATGATGCAAGCAGTAGCTTCCCGAAAAGATGAGAACAGAATGAGCTCATCGGCTGTGGCAGCATGCATGGCACCATTACTTCTTCGCCCCCTTCTAGTTGGGGATTGTGAGATAGAAAATGATTTTGATGTAGGTGGGGATAGTTCCCTTCAACTTCTACAAGCAGCTGCTGCGGCTAACCATGCTCAAGGAATTGTTATTACATTATTAGAAGAATATAACAGCATATTTGAGGAAGGTTCTTCGTCTCCCGGACCTGATATGTACATAGACTCAGAAGATGATGAATCTGAGAGTGAGGATGATGATTTGTCCTATGATGATTATTATGATGATGAGCAAGATGAATCAATAGAGGGGTCAGATGTAGATGCTAGTGATGAACTTGTTAGTGAAACCAACAGCGAGACCGGAGACTCTGCAGTCAACGATGAATATGATGATAAGGACCATAATATTTCATATTCAAGTTCAAAGTCCTCAGAGGTTTGTGACTATCTTGAAGTCTCATTGCCTCAGTCTGAAGATATCAAAAGCTGTGAAAATTTCACAAGCCAAAATAAGACTGCTTCTGCAAATGACTCCACTAAGCCCACATATATAATTGAAGGCTTATCCCCTGACCAAACTACAATGAATAGATCAAATTGTCCTAGCACTTCTTCATGTAACGATGCCATATCCAATAGGAAAATGCATCGATGCCGCACTGTTTTGGGGCAAAACCATGGAAGCAAGGACCTTTCCATGGAATCCATTGATTTTCTAGACGAAAATGAAGCTGAAGTTGAGAGGCTTGAAGCTGTTAAGACAGAATTGCAAAGGCAAATTGCAGAGGAGGTAAAAGTAAATGCAAAGCTGCAGTCTTATGTGGAAACACGAAAGGAAGCATTGCACGAGCGTCGTCTGGTTCTTGAGCGAAATGTGGATAAATTACAGGAACAATTGCTAAAGGAGAAGAGCTTCAGGGCAACTCTTGAAGCAGGACTTGAGATTCATCCAGGGACTTCGTCTGAGTTATCGGGTATTGATGAAAAGACCAAGGCAGATGTTGAGGAAATAGTGCTGATAGAAGCAGATCTTGCCGACTTAGAACGGAAGGTTAATGAGCTTGGTTTACGGCTTAATGCACAAGTTGAATGGAATTCTGGTTCTATATCTCAACAGATATCAAGCCATGAAAGAAATTTGAAGAACAAGCCAGATACTGAAGTTGCAGCCATTTCAGAATCTGACAGGTCAATAAAAAAGCAGGACAGTCATTTTGGTGAAGCAGGAAACGAGAATGAGAGAAAACCAGAGTCAACATCTTTACCAAATAAACATTCGCCTAGTTCCAAGAAATCTGTTGCAAGAGCTGAGCAGGGAACAAGTTTCACTACTTCTACAATTACAAGACTAACGTCCAAACTATACTTTTTGAAGGATCGCCGTAGTCAGTTTTCAAATGAAATACGAAACATGAATAAAGGAAAAGCACTTGAACTTCAGCTACCACCTCCATCTCCCAACGAACGTCAATCGCCAAATAAGTCTCTACTTCGATCCCCAAATATGTCTCGAGAAAACGAACGTCAATCGCCAGTTCCATCCCCCAATAAGTCTCGAGGGTTTGAATTTTACATGTCTCTTATGTCTCCAAAAAGGACCCGAGGATCTGAAAATCATTCTCCATCAACCTCTGAGAAAGTTAGAGGCAATGAAGATCATTCACCTCAATATTCAGAAAAACTGAGAAAATCAGATAGCCAGCCATATCACTCAGATAGTCAGAATGAATCTTCACAATTATACTTGAAAAGAGGAATGTCGGAAGGGAATATTCATAATGTCGACAAAAGTCAATTACATTAA 2796 0.4106 MNSAQGFSDASLSSPKHKLQPAASSVQLASHSRNGNKVFKCGTLFLSSKGGIGWTSWKKRWFILTQTSLVFFRSDPNGVPQKGNEANLTLGGIDLNNSGSVSIKADKKLLTVQFPNVHDGRVLTLKAETTEDLYEWKTALENVLAHAPSATNVMGQSGIFRSYQADSLDIYLDQLKDKETVNYAVLGRPILLALEEVDGTPSFLEKALRFIEEHGAKVEGILRQAADVEDVENRVREYEQGKVEFSEGEDAHVVADCVKHVLRELRSFPIPVSCCKALLAACRTARENRVSAMRTAICDTFPEPNRRLLQRILLMMQAVASRKDENRMSSSAVAACMAPLLLRPLLVGDCEIENDFDVGGDSSLQLLQAAAAANHAQGIVITLLEEYNSIFEEGSSSPGPDMYIDSEDDESESEDDDLSYDDYYDDEQDESIEGSDVDASDELVSETNSETGDSAVNDEYDDKDHNISYSSSKSSEVCDYLEVSLPQSEDIKSCENFTSQNKTASANDSTKPTYIIEGLSPDQTTMNRSNCPSTSSCNDAISNRKMHRCRTVLGQNHGSKDLSMESIDFLDENEAEVERLEAVKTELQRQIAEEVKVNAKLQSYVETRKEALHERRLVLERNVDKLQEQLLKEKSFRATLEAGLEIHPGTSSELSGIDEKTKADVEEIVLIEADLADLERKVNELGLRLNAQVEWNSGSISQQISSHERNLKNKPDTEVAAISESDRSIKKQDSHFGEAGNENERKPESTSLPNKHSPSSKKSVARAEQGTSFTTSTITRLTSKLYFLKDRRSQFSNEIRNMNKGKALELQLPPPSPNERQSPNKSLLRSPNMSRENERQSPVPSPNKSRGFEFYMSLMSPKRTRGSENHSPSTSEKVRGNEDHSPQYSEKLRKSDSQPYHSDSQNESSQLYLKRGMSEGNIHNVDKSQLH* 932
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2223 931 CDD RhoGAP 201 354 - -
Mtr5g2223 931 MobiDBLite consensus disorder prediction 709 751 - -
Mtr5g2223 931 Coils Coil 609 629 - -
Mtr5g2223 931 MobiDBLite consensus disorder prediction 403 440 - -
Mtr5g2223 931 Coils Coil 668 688 - -
Mtr5g2223 931 Gene3D - 25 146 IPR011993 -
Mtr5g2223 931 Gene3D Rho GTPase activation protein 170 393 IPR008936 GO:0007165
Mtr5g2223 931 Pfam RhoGAP domain 201 344 IPR000198 GO:0007165
Mtr5g2223 931 CDD PH 40 140 - -
Mtr5g2223 931 Pfam Leucine-zipper of ternary complex factor MIP1 612 692 IPR025757 -
Mtr5g2223 931 MobiDBLite consensus disorder prediction 699 772 - -
Mtr5g2223 931 MobiDBLite consensus disorder prediction 821 847 - -
Mtr5g2223 931 PANTHER RHO GTPASE-ACTIVATING PROTEIN 7 20 807 - -
Mtr5g2223 931 MobiDBLite consensus disorder prediction 869 900 - -
Mtr5g2223 931 MobiDBLite consensus disorder prediction 752 772 - -
Mtr5g2223 931 MobiDBLite consensus disorder prediction 392 471 - -
Mtr5g2223 931 SMART RhoGAP_3 198 388 IPR000198 GO:0007165
Mtr5g2223 931 MobiDBLite consensus disorder prediction 901 915 - -
Mtr5g2223 931 Pfam PH domain 40 144 IPR001849 -
Mtr5g2223 931 MobiDBLite consensus disorder prediction 807 931 - -
Mtr5g2223 931 SMART PH_update 38 147 IPR001849 -
Mtr5g2223 931 SUPERFAMILY GTPase activation domain, GAP 200 393 IPR008936 GO:0007165
Mtr5g2223 931 SUPERFAMILY PH domain-like 28 145 - -
Mtr5g2223 931 PANTHER RHO GTPASE-ACTIVATING PROTEIN REN1 20 807 - -
Mtr5g2223 931 ProSiteProfiles PH domain profile. 37 145 IPR001849 -
Mtr5g2223 931 ProSiteProfiles Rho GTPase-activating proteins domain profile. 192 391 IPR000198 GO:0007165
Mtr5g2223 931 Coils Coil 570 597 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2223 Mtr-Chr5 29115710 29129671 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2223 - - cam:101498807 1313.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g2223 5 29115710 29129671 Mtr5g2223 5 29115710 29129671 ECH