Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2208 ATGTCAGATTCCATACTTTCATCCATAAACCCTCCCAAAACCTTCCACACCAAAATTCCACTCATCACCAACCCCATTTCCACAACCACAATCGCTTTCAAACCAAACAAATTCAAAATCCCAACCATGATTTGCGCTTCAACGACGCCAAAACAAGGTGAAATTCAACCTTCTTTTGGAGATACTCTCATCAACAACACTCGCAAACAACAACTTCTGGACCCCATCACTTCTTCTCTCTCTAATTGTCTCTCTGAAACAAACCTTCATTTCGCTCTTCCTCAACTCAAATCCAAAATTCGCGGCAAAGTTCGAGATATTTATGACAGCGGGGATTATCTTGTTTTAGTGACTACTGATCGTCAGAGTGCTTTTGATAGGGTTCTTGCTTCCATTCCTTTTAAAGGCCAGGTTCTTAATGAGACAAGTCTGTGGTGGTTTGAGAGAACAAGGCACATAGTTTCGAATGCAGTTGTGTCGGCTCCAGATAAAAATGTGACAATAGCGAAGAAATGTTCAGTTTTCCCTGTTGAGTTTGTTGCTAGAGGGTTTGTCACTGGAAGTACGGATACTTCTTTATGGACAGTGTACAATAAAGGCAATCGTAACTACTGTGGAAATGTCCTACCAGATGGAATGGTTAAAAATCAAAAGTTGCCGAAAAATATACTCACTCCAACTACCAAAGCTGCAGACCATGATGTTCCTGTCACTCCAGATGAGATCATAGAAAAAGGACTGATGAGTCGAGATGATTATGCAGAAGCGAGTGAAAAAGCTTTAAGGTTGTTTGAATACGGACAGCAAGTGGCCTCGGACCACGGCCTTATATTGGTAGACACTAAATATGAATTTGGGAAGGCAAATGATGGATCAATTTTGTTGATTGATGAGGTCCATACTCCTGATTCAAGTAGATATTGGATTGCCAATTCTTACTTGGAGCGCTTTCAAAATGGTCTTGAGCCTGAAAATGTTGATAAGGAGTTCTTGAGGTTGTGGTTTAAAAGTCATTGCAACCCTTATGAAGACGAGGTCCTTCCTGATGCTCCCGAAGATCTTGTATGTGAATTGGCTTGGCGATACATCTTCTTATACGAGACTATAACAAAATCAAAGTTTGAGGTGCAGTCGACCGAGGAGCCAATACACGACCGAATTTCACGGAATGTTGCAACTGCACTATCATCCTTAAAGTAG 1200 0.4117 MSDSILSSINPPKTFHTKIPLITNPISTTTIAFKPNKFKIPTMICASTTPKQGEIQPSFGDTLINNTRKQQLLDPITSSLSNCLSETNLHFALPQLKSKIRGKVRDIYDSGDYLVLVTTDRQSAFDRVLASIPFKGQVLNETSLWWFERTRHIVSNAVVSAPDKNVTIAKKCSVFPVEFVARGFVTGSTDTSLWTVYNKGNRNYCGNVLPDGMVKNQKLPKNILTPTTKAADHDVPVTPDEIIEKGLMSRDDYAEASEKALRLFEYGQQVASDHGLILVDTKYEFGKANDGSILLIDEVHTPDSSRYWIANSYLERFQNGLEPENVDKEFLRLWFKSHCNPYEDEVLPDAPEDLVCELAWRYIFLYETITKSKFEVQSTEEPIHDRISRNVATALSSLK* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2208 399 SUPERFAMILY SAICAR synthase-like 90 374 - -
Mtr5g2208 399 Gene3D - 176 319 - -
Mtr5g2208 399 PANTHER BNAC03G41880D PROTEIN 31 398 - -
Mtr5g2208 399 CDD SAICAR_synt_Sc 101 370 - -
Mtr5g2208 399 Hamap Phosphoribosylaminoimidazole-succinocarboxamide synthase [purC]. 96 389 IPR028923 -
Mtr5g2208 399 PANTHER PHOSPHORIBOSYLAMINOIMIDAZOLE-SUCCINOCARBOXAMIDE SYNTHASE 31 398 - -
Mtr5g2208 399 ProSitePatterns SAICAR synthetase signature 1. 174 188 IPR018236 GO:0004639|GO:0006164
Mtr5g2208 399 ProSitePatterns SAICAR synthetase signature 2. 278 286 IPR018236 GO:0004639|GO:0006164
Mtr5g2208 399 Gene3D Phosphorylase Kinase; domain 1 86 175 - -
Mtr5g2208 399 Pfam SAICAR synthetase 101 345 IPR028923 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2208 K01923 - gmx:100801209 644.425
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g2208 5 28779098 28783960 Mtr5g2208 5 28779098 28783960 ECH