Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2159 ATGTCATCAAGTGGTGGTGGATGCAGTATAGTTTGGTTCAGAAGAGATCTGAGGGTAGAGGATAACCCTGCACTAGCAGCAGGTGTTAGAGCAGGTGCTGTAGTTGGTGTTTTTATATGGGCACCTGAAGAAGAAGGACAATATTATCCTGGTAGGGTTTCAAGATGGTGGCTTAAGAATAGTTTGGCTCATCTTGATTCATCTTTGAGAAATCTTGGTACTCCTCTTGTTACCAAAAGATCAACTGATAGTGTTTCTTCTTTGTTGGAAGTTGTTAAATCCACTGGAGCCACTCAAATCTTCTTCAACCATTTATATGATCCATTGTCACTTGTAAGGGATCATAGAGCAAAGGAAATTCTAACGGCTCAAGGGATTACCGTACGTTCGTTCAACTCAGATTTATTGTATGAACCATGGGATGTGAACGATGAAAATGGCCAACCGTTCACAACTTTTGATTCTTTTTGGGAAAGATGCCTTAGCATGCCTTATGACCCACAAGCACCTCTTCTCCCACCTAAAAGAATTATTCCAGGTGATGTATCAAAGTGTCCTTCTGATACATTGGTTTTTGAAGACGATTTAGAGAAAGCGAGCAACGCACTTCTTGCTCGAGCATGGTCACCAGGGTGGAGTAATGCAAACAAGGCATTAACAACCTTCATAAACGGTCCACTGATCGAGTACTCTAAGAATCGAAGGAAAGCAGACAGTGCCACAACCTCATTTCTCTCTCCACATTTGCATTTCGGAGAAGTTAGTGTCAAAAAAGTATTCCATCTTGTCCGAATCAAACAAGTCTTTTGGGCGAATGAAGGAAATGAAGCCGGCGAAGAAAGTGTTAACTTGTTTCTCAAGTCAATTGGTCTTAGAGAGTATTCAAGGTACATTAGTTTCAACCACCCTTATAGTCATGAAAGGCCTCTACTTGGACACCTTAAGTTTTTCCCTTGGGTGGTGAATGAAGGATATTTTAAGGCATGGAGACAAGGAAGGACCGGTTACCCTTTGGTGGACGCTGGAATGAGAGAGTTGTGGGCAACTGGTTGGCTACACGATCGGATCCGTGTTGTCGTTTCTAGTTTCTTTGTCAAGGTTTTGCAGCTTCCTTGGAGATGGGGGATGAAATATTTTTGGGATACCCTTTTGGATGCTGATCTCGAGAGTGATGCTCTTGGTTGGCAGTATATATCTGGTACTCTACCTGATGGTCGTGAATTCGACAGAATCGATAATCCACAGTTTGAGGGATACAAGTGTGATCCGAATGGAGAATATGTGCGACGTTGGCTTCCTGAACTTGCAAGATTACCAACCGAATGGATACATCATCCATGGAATGCACCAGAATCAGTACTCCAAGCTGCTGGTATTGAACTTGGCTCAAACTACCCTCTTCCAATTGTGGAAATAGATGCAGCAACAGTGAGGCTCGAGGAAGCACTTATACAGATGTGGCAACTAGAAGCAGCTTCAAGAGCTGCAGCAGAAAACGGAACCGAAGAAGGTCTTGGAGACTCAGCTGAATCAACACCTATTGCTTTTCCTCAGGACATACAAATGGAGGAAAGACATGAACCTATTAGGAACAATGCACCTCACGGTACTCGGCGCTACCAGGATCAAATGGTACCAAGTATGACTTCTTCTAGAGTGAGAGTCGAAGAAGAAGAAACTTCTTCGGTTCGAAACTCGGCTGGAGACAGCAGAGCTGAAGTGCCAACAAATGCAAATGCAAGAGAGGCGATGAACCAAGGAGCGTTGCAGAATGGGAATAGAAACACTAGACAAAGGCATAATCCTACAACTACATTTTGGCTGAGAAATGCAGCTGAAGATTCCACAGCAGAATCTTCAAGTAGTACTAGGAGAGAAAGAGATGGAGGTGTTGTTCCAGAGTGGTCGCCGCAGGCTTCTAACTTCTCTGATCAATATGTAGATGATGAAAATGGTATAGGAGCTACTTCTCCTTACTTGCAGAGGCATCCACAGTCTCACCAATTGATGAGTTGGACACGCCTACCTCAAACTGGATAA 2040 0.4358 MSSSGGGCSIVWFRRDLRVEDNPALAAGVRAGAVVGVFIWAPEEEGQYYPGRVSRWWLKNSLAHLDSSLRNLGTPLVTKRSTDSVSSLLEVVKSTGATQIFFNHLYDPLSLVRDHRAKEILTAQGITVRSFNSDLLYEPWDVNDENGQPFTTFDSFWERCLSMPYDPQAPLLPPKRIIPGDVSKCPSDTLVFEDDLEKASNALLARAWSPGWSNANKALTTFINGPLIEYSKNRRKADSATTSFLSPHLHFGEVSVKKVFHLVRIKQVFWANEGNEAGEESVNLFLKSIGLREYSRYISFNHPYSHERPLLGHLKFFPWVVNEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGREFDRIDNPQFEGYKCDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVEIDAATVRLEEALIQMWQLEAASRAAAENGTEEGLGDSAESTPIAFPQDIQMEERHEPIRNNAPHGTRRYQDQMVPSMTSSRVRVEEEETSSVRNSAGDSRAEVPTNANAREAMNQGALQNGNRNTRQRHNPTTTFWLRNAAEDSTAESSSSTRRERDGGVVPEWSPQASNFSDQYVDDENGIGATSPYLQRHPQSHQLMSWTRLPQTG* 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2159 679 Pfam DNA photolyase 9 165 IPR006050 -
Mtr5g2159 679 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 303 504 - -
Mtr5g2159 679 Gene3D HUPs 10 208 IPR014729 -
Mtr5g2159 679 PANTHER CRYPTOCHROME-1 7 601 - -
Mtr5g2159 679 ProSitePatterns DNA photolyases class 1 signature 1. 334 346 IPR018394 -
Mtr5g2159 679 Pfam Blue/Ultraviolet sensing protein C terminal 513 624 IPR020978 -
Mtr5g2159 679 Gene3D - 136 295 - -
Mtr5g2159 679 TIGRFAM crypt_chrom_pln: cryptochrome, plant family 8 483 IPR014134 GO:0009785|GO:0009882
Mtr5g2159 679 PRINTS DNA photolyase signature 145 161 IPR002081 -
Mtr5g2159 679 PRINTS DNA photolyase signature 334 350 IPR002081 -
Mtr5g2159 679 PRINTS DNA photolyase signature 354 372 IPR002081 -
Mtr5g2159 679 PRINTS DNA photolyase signature 393 407 IPR002081 -
Mtr5g2159 679 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 7 136 IPR006050 -
Mtr5g2159 679 Pfam FAD binding domain of DNA photolyase 285 481 IPR005101 -
Mtr5g2159 679 MobiDBLite consensus disorder prediction 588 618 - -
Mtr5g2159 679 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 9 180 IPR036155 -
Mtr5g2159 679 MobiDBLite consensus disorder prediction 547 575 - -
Mtr5g2159 679 ProSitePatterns DNA photolyases class 1 signature 2. 354 373 IPR018394 -
Mtr5g2159 679 PANTHER CRYPTOCHROME 7 601 IPR002081 -
Mtr5g2159 679 MobiDBLite consensus disorder prediction 588 679 - -
Mtr5g2159 679 MobiDBLite consensus disorder prediction 658 679 - -
Mtr5g2159 679 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 194 490 IPR036134 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2159 Mtr-Chr5 28063526 28069541 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2159 K12118 - gmx:100815428 1240.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g2159 5 28063526 28069541 Mtr5g2159 5 28063526 28069541 ECH