Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2152 ATGAATAACAGAAAAGATCATGAACTTGTTGGAAAAAGAACAAGGTTTATGATGAATAACATTAACAACAGCAACAGCAACAATGGTTCTTCTCATTCTCATGATGTTACTGTTCCATCATCACTCATGTCTCATCTTCAGAATCAATCAATCTTTAACCCTCAGGCTCATTCAAATGGGTTTCCTTTTTGGAGCAGCGATGAGATTATCAATAACAATGATCATCATCATCATCAATTGTCTCTTGATCTCTCTGCAATGACCCTTTTGGATGAAGATCATCATCAACAACATTCTCAACCTAGCAACGTTGTTAACAACATGTCCAGAATCAGAGGTAATAATAGTAATAACAATCTTGTTGAACCATTCACTAACATGCCTTGTTTTTGGGAATCTCATGCATACAACAATAACAACGTTGTTGATGATGAAACAGTAACAGTAACACACCCACGTTACCAAAACATGGGTGGTGGTGGTGGTAGTCCAAAAGCCTCAACTTTTGGGGTTTCACAAAATCCACAAGGTTTAGTTTCTGAAAATATCAAGTGGGGTATGCAAAAAGGTCACACCTTTACTGGAATATCTCAAATGGGTTCTTCTATTGATCTTGGAAACAATGTTCCTTATGGTAATGGAGTTTGTTATGGTAGAGGTAGAGGTAGAGTTGTTCCGGTTCAGCTGCAAAACCCGTCTTTTTCTTCGCCTTATAACCCTTATGAACAACATGTTGTGTATCCTTCACCAAGAGGGTCTTCTTTTGGAATGGAGAATGATTTAGGATCATGGGATGTTACAACAAATCCTATCATGTACACTACTACTCCAAATGTAAACAATGTTCCTTCAACACCACTTTATTTTCCTTCTAATAGGGGACTTCAACAGCTTCCTCAATCTCTTTATCCTACTAGACCTATTGAGGAACCAGTGGCTTTTAAATGTGATAATAGTTTTATCTTTCAAGAGAATGACATGAAAAATGAGTGCAATAATTCATTGTTGGCTGGTAGTGGTGTTGGTGGTGGTGGTAGAAAGTTTTCAGTTTCACACTCACAAGAGGCGGTGATTCCTCAAGTTTCTCATTTGCCTAGTAGAAGTGAAAATAGTAGTAGGAGTTTTGTATTTGATGATGATGATGTACAACAAAATTTGATGAACTTTGGTTCATGTTTGCCTGAGCTACAGAGTTATATGTTTCATATGGCAAAGGATCAGAATGGTGGCCGTTTTCTGCAGGGAATGGTTGAGAAAGGAACTGTTGAAGATATGGAAATGGTGTTTAATGGAGTTATTGATAATGTTGTGGAGCTTATGATGGACCCTTTTGGGAATTATCTTGTGCAAAAATTGCTGGAGTTTTGTAGGGATGATCAAAGGTTGCAGATTGTTCTTATGTTGACTAAAGTTCCTGGTCAGCTAGTCAGAACCTCATTCAACACACATGGCACAAGAAGTGTTCAGAAGCTGATTTCTACCCTCAAATCAAGGAGGCAAATTGCATTGGTGAGGTCTGCAATTCTACCTGGTTTTCTTGATCTTGTTAAGGATCTGAATGGAAATCATGTCATACAACGTTGCTTGTCATGCTGGAGTGTTCAAGATAATGAGTTTATTTTTGATGCTGCCACAAAGTTCTTGACTGATGTTGCTACTCATCAACATGGCTGCTGTGTACTTCAACGCTGCATTGATTTCTCAAAGGGAAAGAGTCTAGAAAAGCTGGTCAAAGAAATTTGCAAACATGGCTTTTCCCTAGCTCAAGATCCATATGGAAATTATGTTATTCAGTACATTATAGAGTTGCAGATTCCAAGTGCTATGGCCAAACTTACTCCACAGTTCAAAGGGAACTATGTAATCCTCTCTACACAAAAATTTAGCAGCCATGTGGTCGAAAAGTGCCTCATATATATTGTAGAGACTAGAGCAAGGATTGTCCAAGAATTGCTTTCTGTTCCTCACTTTGAGCGTCTTCTGCAAGACCCTTATGCCAACTATGTTGTTCAGAAAGCACTCGAATATACCAAGGGCTCTCTTCATGCATCTTTGGTTGAAGCAGTTAGAGCTCACAAAATCTTGCGTACAAGCCCATATTGCAAGAGGATTTTCTCAAAAACCCTGCCTAAAAAGTAA 2139 0.3843 MNNRKDHELVGKRTRFMMNNINNSNSNNGSSHSHDVTVPSSLMSHLQNQSIFNPQAHSNGFPFWSSDEIINNNDHHHHQLSLDLSAMTLLDEDHHQQHSQPSNVVNNMSRIRGNNSNNNLVEPFTNMPCFWESHAYNNNNVVDDETVTVTHPRYQNMGGGGGSPKASTFGVSQNPQGLVSENIKWGMQKGHTFTGISQMGSSIDLGNNVPYGNGVCYGRGRGRVVPVQLQNPSFSSPYNPYEQHVVYPSPRGSSFGMENDLGSWDVTTNPIMYTTTPNVNNVPSTPLYFPSNRGLQQLPQSLYPTRPIEEPVAFKCDNSFIFQENDMKNECNNSLLAGSGVGGGGRKFSVSHSQEAVIPQVSHLPSRSENSSRSFVFDDDDVQQNLMNFGSCLPELQSYMFHMAKDQNGGRFLQGMVEKGTVEDMEMVFNGVIDNVVELMMDPFGNYLVQKLLEFCRDDQRLQIVLMLTKVPGQLVRTSFNTHGTRSVQKLISTLKSRRQIALVRSAILPGFLDLVKDLNGNHVIQRCLSCWSVQDNEFIFDAATKFLTDVATHQHGCCVLQRCIDFSKGKSLEKLVKEICKHGFSLAQDPYGNYVIQYIIELQIPSAMAKLTPQFKGNYVILSTQKFSSHVVEKCLIYIVETRARIVQELLSVPHFERLLQDPYANYVVQKALEYTKGSLHASLVEAVRAHKILRTSPYCKRIFSKTLPKK* 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2152 712 ProSiteProfiles Pumilio RNA-binding repeat profile. 431 467 IPR001313 GO:0003723
Mtr5g2152 712 ProSiteProfiles Pumilio RNA-binding repeat profile. 543 578 IPR001313 GO:0003723
Mtr5g2152 712 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 364 712 IPR033133 GO:0003723
Mtr5g2152 712 PANTHER PUMILIO-FAMILY RNA-BINDING REPEATPROTEIN 13 712 - -
Mtr5g2152 712 ProSiteProfiles Pumilio RNA-binding repeat profile. 395 430 IPR001313 GO:0003723
Mtr5g2152 712 Gene3D - 383 710 IPR011989 -
Mtr5g2152 712 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 13 712 - -
Mtr5g2152 712 Pfam Pumilio-family RNA binding repeat 400 431 IPR001313 GO:0003723
Mtr5g2152 712 Pfam Pumilio-family RNA binding repeat 619 652 IPR001313 GO:0003723
Mtr5g2152 712 Pfam Pumilio-family RNA binding repeat 435 465 IPR001313 GO:0003723
Mtr5g2152 712 Pfam Pumilio-family RNA binding repeat 512 542 IPR001313 GO:0003723
Mtr5g2152 712 Pfam Pumilio-family RNA binding repeat 477 495 IPR001313 GO:0003723
Mtr5g2152 712 Pfam Pumilio-family RNA binding repeat 550 581 IPR001313 GO:0003723
Mtr5g2152 712 Pfam Pumilio-family RNA binding repeat 660 680 IPR001313 GO:0003723
Mtr5g2152 712 Pfam Pumilio-family RNA binding repeat 585 602 IPR001313 GO:0003723
Mtr5g2152 712 ProSiteProfiles Pumilio RNA-binding repeat profile. 579 614 IPR001313 GO:0003723
Mtr5g2152 712 SUPERFAMILY ARM repeat 391 707 IPR016024 -
Mtr5g2152 712 ProSiteProfiles Pumilio RNA-binding repeat profile. 470 505 IPR001313 GO:0003723
Mtr5g2152 712 CDD Pumilio 403 707 IPR033712 GO:0003723
Mtr5g2152 712 SMART pum_5 470 505 IPR001313 GO:0003723
Mtr5g2152 712 SMART pum_5 543 578 IPR001313 GO:0003723
Mtr5g2152 712 SMART pum_5 615 649 IPR001313 GO:0003723
Mtr5g2152 712 SMART pum_5 507 542 IPR001313 GO:0003723
Mtr5g2152 712 SMART pum_5 431 466 IPR001313 GO:0003723
Mtr5g2152 712 SMART pum_5 579 614 IPR001313 GO:0003723
Mtr5g2152 712 SMART pum_5 652 687 IPR001313 GO:0003723
Mtr5g2152 712 SMART pum_5 395 430 IPR001313 GO:0003723
Mtr5g2152 712 ProSiteProfiles Pumilio RNA-binding repeat profile. 650 687 IPR001313 GO:0003723
Mtr5g2152 712 ProSiteProfiles Pumilio RNA-binding repeat profile. 507 542 IPR001313 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2152 Mtr-Chr5 27931973 27936793 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2152 - - mtr:MTR_5g063650 1357.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g2152 5 27931973 27936793 Mtr5g2152 5 27931973 27936793 ECH