Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2107 ATGGCTGTTGGTGTTCTTCTGTGGTTGTTACTAGCTAAAGGTTTTGTTTTGGAAACTGTAATAGCTGTCACATTTTCTTCAAGGATTATTCACAGGTTTTCTGATGAGGCAAAGGTTCATTTAAGGAACAATGGTGGTGAAAATGTTCAATCATGGCCTAAGAGGGGTAGTTCTGAGTATTTCAGGTTGCTATTGAACAGTGACCTTACACGTCAAAAGATGAAACTTGGTTCACAGGATCAATCTTTTTATCCTTCTGAGGGAAGTAAAACACTTTCCTTTGGCAATGACTTTGTTTGGTTGCATTACACATGGATTGATATAGGAACTCCAAATGTTTCATTTCTAGTTGCATTGGACACTGGTAGTGATATGTTTTGGGTCCCTTGTGATTGCATAGAATGTGCTCCATTGTCAGCTGCTTTCTACAATGCGTTGGATAGGGATTTAAATCAGTATAGCCCATCACTGTCAAGCTCCAGCAGACATCTACCTTGCGGTCATCAGTTGTGTAATCAAAACTCTAATTGCAAAGGCTTTAAGGATCGTTGTCCATATATTAAGGAGTACACATCAGACAATACATCAAGTTCTGGATTTCTTATTGAAGACAAACTACATTTGGCATCTAATAATGCAACAAAGAATTCCATACAAGCCTCTGTCATTCTTGGTTGCGGTAGGAAACAAAGTGGCTACTTTTTAGAAGGGGCTGCTCCTAATGGTATGTTGGGGCTAGGACCTGGAAGCATTTCGGTCCCAGCTTTGCTGGCAAAGGCAGGACTTATTCGGAATTCTATCTCAATTTGTTTAAATGAGAAAGGTTCCGGAAGAATCCTCTTTGGCGATCAAGGGCATGCCACCCAACGACGATCTACTCCATTCTTGCTTGATGATGGGGAATTACTTAACTATTTTGTTGGGGTAGAGAGGTTCTGTGTTGGGAGTTTTTGTTACAAGGAAACTGAATTTAAAGCATTTATTGACACTGGAACATCTTTCACATATCTTCCCAAGGGTGTTTATGAAACAGTTGTTGCAGAGTTTGAAAAACAAGTACATGCAACCAGGATTACTTCACAAATCCAATCAGATTTCAACTGCTGCTATAATGCCAGTTCACGGGAGTCGAATAACTTTCCTCCGATGAAGTTCACTTTCTCTAAGAATCAATCTTTTATAATTCAAAACCCATTCATTTCTATGGATCAGGAAGATACTACCATTTGTTTGGCTGTAGTCCAATCTGATGATGAACTTATTACCATTGGACAAAATTTCCTGATGGGCTATGACATGGTCTTTGATAGGGAGAATCTAAGGTTTGGCTGGTTTAGATCCAATTGTCAAGATAGCATGGGAGAATCAGCAAATTTTACGTCACCGTCCATAGGTGGATCACCAGACTCGATACCATCCAATCAGCAGCAGCGTGTCCCCAATAATACTCGTTCTGTGCCACCTGCCATTGCTGGAAAGACATCCCCCAAACCCTCTGCAGCCAAACCTGGACTTAACTCCTGGCATTTGTTAAATTCATTATCGCTTATATGTCTTCTTTTGTTCTGGTAA 1572 0.4027 MAVGVLLWLLLAKGFVLETVIAVTFSSRIIHRFSDEAKVHLRNNGGENVQSWPKRGSSEYFRLLLNSDLTRQKMKLGSQDQSFYPSEGSKTLSFGNDFVWLHYTWIDIGTPNVSFLVALDTGSDMFWVPCDCIECAPLSAAFYNALDRDLNQYSPSLSSSSRHLPCGHQLCNQNSNCKGFKDRCPYIKEYTSDNTSSSGFLIEDKLHLASNNATKNSIQASVILGCGRKQSGYFLEGAAPNGMLGLGPGSISVPALLAKAGLIRNSISICLNEKGSGRILFGDQGHATQRRSTPFLLDDGELLNYFVGVERFCVGSFCYKETEFKAFIDTGTSFTYLPKGVYETVVAEFEKQVHATRITSQIQSDFNCCYNASSRESNNFPPMKFTFSKNQSFIIQNPFISMDQEDTTICLAVVQSDDELITIGQNFLMGYDMVFDRENLRFGWFRSNCQDSMGESANFTSPSIGGSPDSIPSNQQQRVPNNTRSVPPAIAGKTSPKPSAAKPGLNSWHLLNSLSLICLLLFW* 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2107 523 Gene3D Acid Proteases 282 459 IPR021109 -
Mtr5g2107 523 MobiDBLite consensus disorder prediction 456 489 - -
Mtr5g2107 523 Pfam Xylanase inhibitor N-terminal 103 283 IPR032861 -
Mtr5g2107 523 MobiDBLite consensus disorder prediction 456 500 - -
Mtr5g2107 523 ProSiteProfiles Peptidase family A1 domain profile. 102 445 IPR033121 -
Mtr5g2107 523 PRINTS Pepsin (A1) aspartic protease family signature 108 128 IPR001461 GO:0004190|GO:0006508
Mtr5g2107 523 PRINTS Pepsin (A1) aspartic protease family signature 326 337 IPR001461 GO:0004190|GO:0006508
Mtr5g2107 523 PRINTS Pepsin (A1) aspartic protease family signature 421 436 IPR001461 GO:0004190|GO:0006508
Mtr5g2107 523 Pfam Xylanase inhibitor C-terminal 323 443 IPR032799 -
Mtr5g2107 523 Gene3D Acid Proteases 90 281 IPR021109 -
Mtr5g2107 523 SUPERFAMILY Acid proteases 98 451 IPR021109 -
Mtr5g2107 523 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 117 128 IPR001969 GO:0004190|GO:0006508
Mtr5g2107 523 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 5 471 - -
Mtr5g2107 523 PANTHER ASPARTYL PROTEASES 5 471 IPR001461 GO:0004190|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2107 Mtr-Chr5 27168587 27173899 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2107 95 449 Miscellaneous Gene Families AT1G44130 27.778 4.86e-27 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2107 - - lang:109359439 654.055
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g2107 5 27168587 27173899 Mtr5g2107 5 27168587 27173899 ECH