Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1960 ATGGCATCCATGAGTTCTTTGAAAATGATTTCTTCCCTCAACCTTTCTACCTCTCCTCTTCAAACTCAAAACCAAATAGTTTCTTCCGGTCTCTCTCTGTCCTTCCCAAGTAGAAGAAACTTCAACACTTCAACCACAAAGCAAGTATCTACAACCAAAAGAAGTTCTCAGAACACCAGAACCAATGCACTCTTCTTCAATAACCAAAAGCAGCATCAAGAATCTTCAAAACCAGCCAAAGTTCAAGAACTGTTTGTGTATGAGATCAATGAACGTGATAGAGGAAGTCCTGCATACCTTAGACTAAGTCAAAAATCAGTGAACTCACTTGGAGATTTAGTACCATTCAGCAACAAACTCTATTCAGGAAACTTGGAAAAAAGGTTAGGTATAACTTCAGGTTTATGTATACTGATCCAGAATGAACCTGAGAAAAAGGGTGATAGATATGAAGCAATTTACAGCTTCTACTTTGGAGACTATGGTCATATATCAGTACAAGGACCTTATCTCACATACCAAGACACATATCTTGCTATAACAGGTGGTTCTGGAATCTTTGAAGGTGTTTATGGACAAGTTAAACTTCAACAACTTGTGTTCCCATTTAAGCTGTTCTACACTTTTTACTTGAAGGGTGTTGCTGATTTGCCAGCTGATTTACTTGGAAAGCCTGTTGATCCTTCACCACATGTTGAACCATCTACTGCTGCTAAGGCTACTGAGCCTCATGCCTCTTTACCAAACTTCACCAACTGA 759 0.39 MASMSSLKMISSLNLSTSPLQTQNQIVSSGLSLSFPSRRNFNTSTTKQVSTTKRSSQNTRTNALFFNNQKQHQESSKPAKVQELFVYEINERDRGSPAYLRLSQKSVNSLGDLVPFSNKLYSGNLEKRLGITSGLCILIQNEPEKKGDRYEAIYSFYFGDYGHISVQGPYLTYQDTYLAITGGSGIFEGVYGQVKLQQLVFPFKLFYTFYLKGVADLPADLLGKPVDPSPHVEPSTAAKATEPHASLPNFTN* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1960 252 MobiDBLite consensus disorder prediction 228 252 - -
Mtr5g1960 252 Pfam Allene oxide cyclase 77 250 IPR009410 GO:0016853
Mtr5g1960 252 Gene3D - 66 252 IPR044859 -
Mtr5g1960 252 PANTHER ALLENE OXIDE CYCLASE 4, CHLOROPLASTIC 3 252 - -
Mtr5g1960 252 PANTHER ALLENE OXIDE CYCLASE 4, CHLOROPLASTIC 3 252 IPR009410 GO:0016853
Mtr5g1960 252 SUPERFAMILY Allene oxide cyclase-like 80 252 IPR034871 GO:0009695|GO:0046423
Mtr5g1960 252 MobiDBLite consensus disorder prediction 42 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1960 Mtr-Chr5 24265841 24267069 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1960 30 252 Acyl Lipid Metabolism Gene Families AT1G13280 61.674 3.43e-92 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1960 K10525 - gmx:100800036 397.897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g1960 5 24265841 24267069 Mtr5g1960 5 24265841 24267069 ECH