Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1609 ATGGGTACTTCTAACAACACAGTCATGATGAGATGCTCTCCCAGCAACTCCCTCTTCAAAGCTCTGAAACCCAATTTCCGAAATTCGAATCTTGTTCCCAATTCATCACTTCCATTCTTTTCTTCAACACAGATCAACAAAGGAGCATCAAGGTGCTCTCATAGTCATAGTCATGGTGGTGGGACTGGGAGGGCATATGATGCATTGCTGTTAGATGCTGGAGGCACCCTCTTACAATTGGCCAATCCTGTTGAGGATACTTATGCCACTATTGGATCCAAATTTGGTTTGACTGTGAATCCAGCTGAGATAAAGCAGGGATTTAAGAGAGCGTTTTCTGCTCAATGGTCTGAAAAACTACGATATCAGGGTGATGGGAGGCCATTTTGGAAATTTGTAGTTTCTGAAGCCACCGGTTGCGGAGACGAAGACTTTTTTGAGGAAGTTTATGAGTACTATGCAAAAGGTGATGCATGGCATCTTCCCAACGGAGCTTTTGACACAATGACTCATCTCAAGGATGCTGGAGTTAAGATGGCTGTTGTGTCCAATTTTGACTCTCGCTTAAGGAAGCTATTGAAGGATCTTAACGTTTTACATCTATTTGATGCTGTCATTATATCATCAGAGGTTGGATATGAAAAACCAGACCAAAGAATATTTCAAGCTGCTCTAGATCAATTAAATGTAGAGGCTGGCAAAGCCTTACACATAGGAGATGATCAAAAGGCAGATAAATTCGGGGCCAATGATGTAGGGATAGATTGCTGGTTATGGGGCACTGATGTGAAGACATTCTCTGAGATACAAATCCGCATCCTTAATCCAGAGGCATAA 837 0.4229 MGTSNNTVMMRCSPSNSLFKALKPNFRNSNLVPNSSLPFFSSTQINKGASRCSHSHSHGGGTGRAYDALLLDAGGTLLQLANPVEDTYATIGSKFGLTVNPAEIKQGFKRAFSAQWSEKLRYQGDGRPFWKFVVSEATGCGDEDFFEEVYEYYAKGDAWHLPNGAFDTMTHLKDAGVKMAVVSNFDSRLRKLLKDLNVLHLFDAVIISSEVGYEKPDQRIFQAALDQLNVEAGKALHIGDDQKADKFGANDVGIDCWLWGTDVKTFSEIQIRILNPEA* 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1609 278 CDD HAD_dREG-2_like 165 275 - -
Mtr5g1609 278 SUPERFAMILY HAD-like 66 265 IPR036412 -
Mtr5g1609 278 PANTHER F14L17.7 PROTEIN 7 277 - -
Mtr5g1609 278 Gene3D - 82 154 IPR044924 -
Mtr5g1609 278 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 66 77 IPR006439 -
Mtr5g1609 278 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 172 185 IPR006439 -
Mtr5g1609 278 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 202 218 IPR006439 -
Mtr5g1609 278 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 220 240 IPR006439 -
Mtr5g1609 278 PANTHER - 7 277 - -
Mtr5g1609 278 TIGRFAM DREG-2: HAD hydrolase, REG-2-like, family IA 69 258 IPR011949 -
Mtr5g1609 278 Gene3D - 70 260 IPR023214 -
Mtr5g1609 278 Pfam Haloacid dehalogenase-like hydrolase 143 256 IPR041492 -
Mtr5g1609 278 TIGRFAM HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 174 253 IPR006439 -
Mtr5g1609 278 SFLD Haloacid Dehalogenase 66 261 - -
Mtr5g1609 278 SFLD C1.5: HAD, Beta-PGM, Phosphatase Like 66 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1609 Mtr-Chr5 17564096 17569476 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1609 - - mtr:MTR_7g039510 507.679
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g1609 5 17564096 17569476 Mtr5g1609 5 17564096 17569476 ECH