Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1583 ATGAATTCGGTTGGTGATGGTTACGCCGTTGAAGTAACTGGTCTTTCACCTCAAGCCACTGATAAAGATGTCTATGAATTTTTCGCTTTCTCTGGTGCTATTCAACATGTTGAAATTATCAGGTCTGGTGATTATGCTTGTACTGCTTATGTGACCTTCAAAGATGCGTATTCTCAAGACACTGCATGTTTACTCAGTGGAGCCACTATTTTAGATCAACGTGTATGCATAACTCGCTGGGGGCAGTATGAAGAACATGATTTTTGGAGCAGGCCCTCCTATAGCCATGAGGAGGAGAATTCTTATACTACACAACATCAGACTCAACATAGCAGTCAATTTGTTTCCTCTGCTGGAGAAGCAGTTGCTATGACTCAAGAAGTCGTTAAGACCATGCTAGCAAAGGGATATGTCCTTAGTAAGGATGCATTATCTAAGGCTAAAGACTTTGACGAGTCACATCGGGTTTCTGCCACTGCAACAGCCAAGGTTTCTGAATTGAGCCAGAAAATCGGCCTCACTGATAAGCTATCTGCTGGTTATGATGCTGTTAAGTCTGTCGATCAGAAGTATAATGTCTCTGGAACAACAATGGCAGCTGCATCCGCAACCGGAAGAACAGTAGCAGCAGCTGCAAACTCAGTGGTAAATAGTAGCTATTTTTCAAAGGGAGCCTTGTGGATGTCTGGTGCTCTAACAAGAGCCGCTCAAGCTGCATCTGATTTGGGTAACCGCGGTACTAAGCAGTGA 750 0.4387 MNSVGDGYAVEVTGLSPQATDKDVYEFFAFSGAIQHVEIIRSGDYACTAYVTFKDAYSQDTACLLSGATILDQRVCITRWGQYEEHDFWSRPSYSHEEENSYTTQHQTQHSSQFVSSAGEAVAMTQEVVKTMLAKGYVLSKDALSKAKDFDESHRVSATATAKVSELSQKIGLTDKLSAGYDAVKSVDQKYNVSGTTMAAASATGRTVAAAANSVVNSSYFSKGALWMSGALTRAAQAASDLGNRGTKQ* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1583 249 SUPERFAMILY RNA-binding domain, RBD 8 85 IPR035979 GO:0003676
Mtr5g1583 249 SMART rrm1_1 9 79 IPR000504 GO:0003723
Mtr5g1583 249 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 82 IPR000504 GO:0003723
Mtr5g1583 249 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 6 249 - -
Mtr5g1583 249 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 72 IPR000504 GO:0003723
Mtr5g1583 249 CDD RRM_Vip1_like 10 78 IPR034360 -
Mtr5g1583 249 Gene3D - 6 115 IPR012677 -
Mtr5g1583 249 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 6 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1583 Mtr-Chr5 17125297 17129191 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1583 - - gsj:114378905 363.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g1583 5 17125297 17129191 Mtr5g1583 5 17125297 17129191 ECH