Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1568 ATGAAGAGTGACATAACAGTAACAAAACTAGTAGCAAATGGTTTATACAAAGAAGCGCTTAACCTATATTCACACCTCCACTCTTCCTCCCCCACCCCTAACACCTTCACCTTCCCCATTCTCCTCAAAGCATGCTCCAATCTCTCTTCCCCTTCTCAAACTCAAATCCTCCATGCCCATCTCTTCAAAACTGGTTTCCACTCCCACCCTCACACATCCACTGCCCTCATTGCCTCTTATGCTGCCAACACTCGCTCTTTCCACTACGCCCTTGAACTGTTCGATGAAATGCCTCAACCAACTATCACTGCCTTTAACGCTGTACTTTCTGGATTATCGCGAAACGGGCCTCGCGGGCAAGCTGTGTGGCTTTTCCGCCAAATTGGGTTTTGGAATATTAGACCCAATTCTGTCACGATAGTGTCTTTACTCTCTGCACGTGATGTAAAAAATCAAAGTCATGTGCAGCAGGTTCATTGCTTGGCATGCAAGTTAGGAGTTGAATATGATGTTTACGTTTCAACTTCGCTTGTTACTGCTTATTCGAAATGTGGGGTTTTGGTTTCTTCGAATAAGGTTTTTGAAAATTTACGCGTGAAAAATGTGGTTACTTACAATGCTTTTATGTCAGGGTTGTTGCAAAACGGGTTTCATCGTGTTGTTTTTGATGTTTTTAAGGATATGACGATGAATTTGGAGGAAAAGCCAAATAAGGTGACTTTGGTGTCTGTTGTTTCAGCATGTGCTACGCTTTCAAACATTCGTTTGGGGAAGCAGGTTCATGGGCTTAGTATGAAACTAGAAGCTTGTGATCATGTTATGGTGGTGACTTCACTTGTGGATATGTATTCAAAGTGTGGTTGTTGGGGTTCTGCTTTTGATGTTTTTAGTAGAAGTGAAAAGAGGAACTTGATCACTTGGAACTCAATGATTGCAGGGATGATGATGAATTCAGAGAGTGAGAGGGCTGTTGAATTGTTTGAGAGGATGGTGGATGAAGGGATTTTGCCTGATTCAGCAACTTGGAACTCTTTGATTAGTGGGTTTGCACAAAAAGGAGTGTGTGTAGAAGCTTTTAAGTACTTCAGTAAAATGCAGTGTGCTGGTGTGGCTCCATGTTTGAAGATTCTCACTAGTCTTTTGTCTGTGTGTGGTGATTCATGTGTGTTGCGAAGTGCGAAAGCGATACATGGCTATGCTTTAAGAATTTGTGTTGATAAGGATGACTTTTTGGCAACTGCTTTGGTTGATACGTATATGAAATGCGGGTGTGTTTCTTTCGCACGTTTTGTTTTTGATCAGTTTGATGTAAAACCAGATGATCCTGCATTTTGGAATGCAATGATAGGAGGGTATGGAACAAATGGAGACTACGAGTCTGCTTTTGAAGTCTTTTATGAAATGTTGGATGAAATGGTTCAACCAAACAGTGCAACATTTGTTAGTGTTCTATCTGCCTGTAGCCACAGTGGCCAAATTGAGAGAGGGTTACGTTTTTTCAGAATGATTAGAAAGTATGGTTTGGATCCAAAGCCTGAGCATTTCGGATGTGTGGTTGATCTCTTGGGTCGAGCCGGTCAGTTGGGCGAAGCTCGAGATTTGGTGCAAGAATTAGCAGAACCTCCTGCATCTGTTTTTGATTCTTTGCTTGGTGCATGTAGGTGCTACCTAGATTCCAATCTTGGGGAAGAGATGGCCATGAAACTTATTGACATAGAACCGAAAAATCCAGCTCCACTGGTGGTTCTGTCTAACATATATGCTGCATTGGGAAGATGGAGTGAAGTAGAAAGGATAAGAGGATTGATCACAGATAAAGGATTGGACAAAAACTCTGGTATTAGCATGATAGAAGTTACATGA 1863 0.4187 MKSDITVTKLVANGLYKEALNLYSHLHSSSPTPNTFTFPILLKACSNLSSPSQTQILHAHLFKTGFHSHPHTSTALIASYAANTRSFHYALELFDEMPQPTITAFNAVLSGLSRNGPRGQAVWLFRQIGFWNIRPNSVTIVSLLSARDVKNQSHVQQVHCLACKLGVEYDVYVSTSLVTAYSKCGVLVSSNKVFENLRVKNVVTYNAFMSGLLQNGFHRVVFDVFKDMTMNLEEKPNKVTLVSVVSACATLSNIRLGKQVHGLSMKLEACDHVMVVTSLVDMYSKCGCWGSAFDVFSRSEKRNLITWNSMIAGMMMNSESERAVELFERMVDEGILPDSATWNSLISGFAQKGVCVEAFKYFSKMQCAGVAPCLKILTSLLSVCGDSCVLRSAKAIHGYALRICVDKDDFLATALVDTYMKCGCVSFARFVFDQFDVKPDDPAFWNAMIGGYGTNGDYESAFEVFYEMLDEMVQPNSATFVSVLSACSHSGQIERGLRFFRMIRKYGLDPKPEHFGCVVDLLGRAGQLGEARDLVQELAEPPASVFDSLLGACRCYLDSNLGEEMAMKLIDIEPKNPAPLVVLSNIYAALGRWSEVERIRGLITDKGLDKNSGISMIEVT* 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1568 620 Pfam PPR repeat family 444 488 IPR002885 -
Mtr5g1568 620 Pfam PPR repeat family 200 249 IPR002885 -
Mtr5g1568 620 Pfam PPR repeat family 303 341 IPR002885 -
Mtr5g1568 620 Pfam E motif 556 618 IPR046848 -
Mtr5g1568 620 SUPERFAMILY TPR-like 12 596 IPR011990 GO:0005515
Mtr5g1568 620 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 303 337 IPR002885 -
Mtr5g1568 620 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 338 372 IPR002885 -
Mtr5g1568 620 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 8 615 - -
Mtr5g1568 620 PANTHER OS07G0578800 PROTEIN-RELATED 8 615 IPR045215 GO:0003723|GO:0009451
Mtr5g1568 620 Gene3D Tetratricopeptide repeat domain 491 617 IPR011990 GO:0005515
Mtr5g1568 620 Gene3D Tetratricopeptide repeat domain 150 261 IPR011990 GO:0005515
Mtr5g1568 620 Gene3D Tetratricopeptide repeat domain 263 392 IPR011990 GO:0005515
Mtr5g1568 620 Gene3D Tetratricopeptide repeat domain 393 490 IPR011990 GO:0005515
Mtr5g1568 620 Gene3D Tetratricopeptide repeat domain 4 149 IPR011990 GO:0005515
Mtr5g1568 620 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 441 475 IPR002885 -
Mtr5g1568 620 TIGRFAM PPR: pentatricopeptide repeat domain 445 476 IPR002885 -
Mtr5g1568 620 TIGRFAM PPR: pentatricopeptide repeat domain 305 339 IPR002885 -
Mtr5g1568 620 TIGRFAM PPR: pentatricopeptide repeat domain 203 237 IPR002885 -
Mtr5g1568 620 TIGRFAM PPR: pentatricopeptide repeat domain 341 372 IPR002885 -
Mtr5g1568 620 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 476 510 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1568 Mtr-Chr5 16861470 16866342 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1568 13 619 Glycoside Hydrolase AT3G49170 27.805 1.24e-75 256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1568 - - gmx:100809263 861.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g1568 5 16861470 16866342 Mtr5g1568 5 16861470 16866342 ECH