Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1549 ATGGAAGAAAGTGAACAAGTGAAAATTGAAGAGAAAATAGAAAGATTATGGAGTTGGGGTGCTGGAACAGATGGTCAATTAGGAACAGGAAGACTTCAAGATGAACAAATCCCTCAACAACTGTCTCTGTCTCTGCCCTCTGTCTCTTCACTTGCCTGTGGCGGCGCTCATGTCATTGCCTTAACCTCTGATGGGAAGGTATTATCATGGGGTAGGGGAAATTCTGGTCAACTAGGCCATGGAGAGGTTGTCAATAACTTGTTATATCCCAAGGCTATAACATCATTGGACAACTACTTCATAACCCATGTCTCTGCTGGTTGGGGCCACTCAGGTTTTGTTTCAGATTCTGGGTGCCTGTTCACTTGTGGGGATGGTTCCTTTGGCCAACTTGGGCATGGTGATTATGCTTCACATAGTTCACCCATCAAAGTGTCATCTTTTGTTGATCAAAATGTTGCACAGGTAGCATGTGGAATGCGCCATTCTCTTGTTTTGTTGAAAGGCTGTCTTTCAAATCAAGTTTATGGATTTGGCTCTGGTAAGCGTGGTCAGTTGGGTGTCTCCAAAGATAAAATAAAATCTATTAATCTTCCTAAAGTTATTAGTGGATTTGAAGATGAGGAAATAGTTGGAATTTCTGCAAATGGAGACCATAGTGCTGCATTATCTGTTGATGGACATCTTTACACCTGGGGAAGAGGCTTCAAGGGCTATGAAGATTCACACCTTCCACAATGCTTAAACTCTACATCGAAATTTACTAAAGTCACTCTAGGGTGGAACCATGCTTTAGCTATGACTGGTGAGGGGAAGGTTTATATGCTTGGGGGCAACCACCTTGGAGTGCTTAGCGATCTTCACAATGCAAGACCGGCTAAGTCGTTATTCGATTCAAGAGAAGCCAATTTGGAGAAAGCTCCTGGACTTGATGGAACAAAGATTACTGATATTGCTACTGGAGCTGAGCATTCTGTCCTTGTCACAGAGAATGGAGAAATAAAGACATGGGGTTGGGGTGAGCATGGTCAACTAGGGTTAGGGGATGATGGTGACCGAATCAGTCCTGTTACTGTAAATCTTGGTTATGATCTGAATGAAGCTGCATCAATCAGAGTTTATTGTGGAAGTGGTTTTACGTTTGCTTTAACAAAGCCATAA 1161 0.4272 MEESEQVKIEEKIERLWSWGAGTDGQLGTGRLQDEQIPQQLSLSLPSVSSLACGGAHVIALTSDGKVLSWGRGNSGQLGHGEVVNNLLYPKAITSLDNYFITHVSAGWGHSGFVSDSGCLFTCGDGSFGQLGHGDYASHSSPIKVSSFVDQNVAQVACGMRHSLVLLKGCLSNQVYGFGSGKRGQLGVSKDKIKSINLPKVISGFEDEEIVGISANGDHSAALSVDGHLYTWGRGFKGYEDSHLPQCLNSTSKFTKVTLGWNHALAMTGEGKVYMLGGNHLGVLSDLHNARPAKSLFDSREANLEKAPGLDGTKITDIATGAEHSVLVTENGEIKTWGWGEHGQLGLGDDGDRISPVTVNLGYDLNEAASIRVYCGSGFTFALTKP* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1549 386 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 332 386 IPR000408 -
Mtr5g1549 386 PANTHER OS01G0777800 PROTEIN 16 380 - -
Mtr5g1549 386 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 156 166 IPR000408 -
Mtr5g1549 386 PRINTS Chromosome condensation regulator RCC1 signature 15 31 IPR000408 -
Mtr5g1549 386 PRINTS Chromosome condensation regulator RCC1 signature 48 61 IPR000408 -
Mtr5g1549 386 PRINTS Chromosome condensation regulator RCC1 signature 67 83 IPR000408 -
Mtr5g1549 386 PRINTS Chromosome condensation regulator RCC1 signature 260 278 IPR000408 -
Mtr5g1549 386 PRINTS Chromosome condensation regulator RCC1 signature 327 348 IPR000408 -
Mtr5g1549 386 Pfam Regulator of chromosome condensation (RCC1) repeat 64 113 IPR000408 -
Mtr5g1549 386 Pfam Regulator of chromosome condensation (RCC1) repeat 15 61 IPR000408 -
Mtr5g1549 386 Pfam Regulator of chromosome condensation (RCC1) repeat 174 223 IPR000408 -
Mtr5g1549 386 Pfam Regulator of chromosome condensation (RCC1) repeat 332 383 IPR000408 -
Mtr5g1549 386 Pfam Regulator of chromosome condensation (RCC1) repeat 117 166 IPR000408 -
Mtr5g1549 386 Gene3D - 241 385 IPR009091 -
Mtr5g1549 386 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 173 226 IPR000408 -
Mtr5g1549 386 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 14 64 IPR000408 -
Mtr5g1549 386 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 65 117 IPR000408 -
Mtr5g1549 386 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 118 169 IPR000408 -
Mtr5g1549 386 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 16 380 - -
Mtr5g1549 386 SUPERFAMILY RCC1/BLIP-II 15 285 IPR009091 -
Mtr5g1549 386 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 227 270 IPR000408 -
Mtr5g1549 386 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 318 328 IPR000408 -
Mtr5g1549 386 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 271 331 IPR000408 -
Mtr5g1549 386 Gene3D - 3 240 IPR009091 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1549 Mtr-Chr5 16622803 16627524 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1549 - - gmx:100793672 626.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g1549 5 16622803 16627524 Mtr5g1549 5 16622803 16627524 ECH