Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1548 ATGCATTCTCTCACCTTCCCACATTTGACCCTTTCTCTCTTTCCCCCTATCTTTGTCTCATCACACTCTTCAAGAAAAGTTCAAAACTTCGCAGTTTTAAGCGAGTTTAGTTTGGTTCTTGGGCGTGAAAGTTCTATCAGAAAAGATCATTTTTACACTCAAAAGGGTTTGTATTGGTCTTGTTCTCGGTTTTTGACACGGTGCAAGGATTGGGCTGGTGATTTTTCGTCTTTGGAGGAGGAGTTGTTGGAGTTCATGCAGAATTCGGAGAATCCAGAAAGGTTTCCTACAAAGGAGGAGTTGATTAGAGGTGGGAGAGTGGATTTGGTTGAAGGGATTGTTAAAGAAGGTGGGTGGTTATCTTATGGGTGGAATTTGAATCATGGGTCTGTTGAAAGTGTTGATTTTGAAGATGGGAATGTAGCTAAGGCTTCTGGGGTTGCTGCTTCTTCGAATTCGGATGATTTGTCTTTGGCTAACTCTTCTCAACCAGCTGAATCAGTGGAAATAGAAGCTGAGGAGTCTGGTATTGAGGGCATACTTAATCGTTTGGAGAAATACAGAAATAGTTCTTTCGGAGGTGGATTCGGAGAGAAAGAAGTTGGTGTTTCGTCCGATAATAAAAAAGATAAAGAGGAATGGGATCATAGAACCATAAAAGATGGAGTAGCTGCCAAACTTAACAATAGTAGTAGACAATCCTCATTGAACCCAACAACCAGTCCCCTCAGTGGTTCCCAGATCAAACTTGATCAACACGGATCTCAACTAGCTTCTAATAATTCAAGAAACTCAATTAAGCCAGAGACATGGAGAAGTTGGATTGATCAGAGAACTGGTTTTTCAAACGCAGATTTTGAAGATGCTGAAATTGTTCCCAGTGAAACTCAGAAAGGACGTGCGAGCGATGTTTCAGGACGACTTGAAATCGTCAAAATAGGAGAGTTTTCTGACGAACCAATAAACAGAGAAACAGGATTAGATACTCTTGACACAATTGTAAATGCAAATCACAATGACATTAAGTCCCGTATCCAGCTTCTGGAATCGGAGCTATCCTCTGTACTTCATTCGTTGAGGTCTAACACCAGTGAAGTTACAATGCTAATGGAGCAGAAGAATTCTTCTGATGATCTAGCAAAGCTTTCCGATGCTTGGGAATTCCAGGAAACTGAAATCATGAATTCTCAAGCCAGACTACGTTCGTTACGTGCCAATTTGGCAGTGTTAGAAGGAAAGATGGCATTGGCAATAATGGATGCACAAAAGGCTATTGATGAGAAGCAGAAGAAGATTGATCATGCCCACAAAGCTTTGAAACTTTTGAAGCCGACTTGTGTAGTTTGGCCTAATATTGCTTCCGAAGTATTTTTAGTAGGATCATTTGATGGCTGGTCTTCCCAGAGAAAGATGGAGAAATCAAATACTGGTATATTTTCTGTGTTTTTGCAGCTGTATCCTGGAAATTATGAGATCAAGTTTATTGTTGACGGTGAATGGAAAATTGATCCATTGCGTCCGGTGGTTAACAACAATGGCTACGTGAATAATCTTCTTGTCGTTCATGATTGA 1572 0.4059 MHSLTFPHLTLSLFPPIFVSSHSSRKVQNFAVLSEFSLVLGRESSIRKDHFYTQKGLYWSCSRFLTRCKDWAGDFSSLEEELLEFMQNSENPERFPTKEELIRGGRVDLVEGIVKEGGWLSYGWNLNHGSVESVDFEDGNVAKASGVAASSNSDDLSLANSSQPAESVEIEAEESGIEGILNRLEKYRNSSFGGGFGEKEVGVSSDNKKDKEEWDHRTIKDGVAAKLNNSSRQSSLNPTTSPLSGSQIKLDQHGSQLASNNSRNSIKPETWRSWIDQRTGFSNADFEDAEIVPSETQKGRASDVSGRLEIVKIGEFSDEPINRETGLDTLDTIVNANHNDIKSRIQLLESELSSVLHSLRSNTSEVTMLMEQKNSSDDLAKLSDAWEFQETEIMNSQARLRSLRANLAVLEGKMALAIMDAQKAIDEKQKKIDHAHKALKLLKPTCVVWPNIASEVFLVGSFDGWSSQRKMEKSNTGIFSVFLQLYPGNYEIKFIVDGEWKIDPLRPVVNNNGYVNNLLVVHD* 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1548 523 Pfam Glycogen recognition site of AMP-activated protein kinase 444 522 IPR032640 -
Mtr5g1548 523 MobiDBLite consensus disorder prediction 224 247 - -
Mtr5g1548 523 Coils Coil 393 413 - -
Mtr5g1548 523 CDD E_set_AMPKbeta_like_N 444 507 - -
Mtr5g1548 523 Gene3D Immunoglobulins 442 523 IPR013783 -
Mtr5g1548 523 PANTHER PROTEIN PTST HOMOLOG 2, CHLOROPLASTIC 9 522 - -
Mtr5g1548 523 MobiDBLite consensus disorder prediction 202 222 - -
Mtr5g1548 523 SUPERFAMILY E set domains 443 522 IPR014756 -
Mtr5g1548 523 Coils Coil 418 438 - -
Mtr5g1548 523 MobiDBLite consensus disorder prediction 195 247 - -
Mtr5g1548 523 PANTHER PROTEIN PTST HOMOLOG 3, CHLOROPLASTIC 9 522 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1548 Mtr-Chr5 16616530 16622284 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1548 - - cam:101492605 733.406
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g1548 5 16616530 16622284 Mtr5g1548 5 16616530 16622284 ECH