Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1497 ATGGCTATCACCACCAAAACGAAACTTATCCTCTCACTTCTCCAACCTCACCACCACACTTTCTCTCTCTTCCAAACTCCAACAACTTTCTCATTCTCTCTCCTCCCCAACCGCTCTCTCAAATTCCCTCTCTCTTTCTCCTTCAAATCCCCACCCTCACCAATCCGCACATTCAATGCCGACGACGACGAAGACGAAGAAGAGGAAATCGACGACGAGGACGATGAAGAAGAAGAAGATATTGCGGCTGATGAATACGATGAAGTCGTTGTATCCGGTGAGGCTTCGGATGAAGATGAAGTTGAGGTGGAAGAATTGGGGAGATATGATGATGGATTTAAGTGGCAGAGAGTTGAGAAGCTTTGTAATGAAGTTAGAGAGTTTGGTGTTGGGATTATTGATGTTGATGAACTTGCTTCTGTTTATGATTTTCGGATTGATAAGTTTCAGCGGCAAGCGATTCAAGCTTTTCTGAGAGGTTCATCGGTGGTGGTTTCTGCTCCGACGAGTAGTGGAAAAACTTTGATTGCAGAGGCTGCAGCGGTTGCTACTGTGGCTAGGGGACGAAGATTGTTCTACACGACTCCTCTTAAAGCGTTGTCTAATCAGAAGTTTCGTGAATTCCGGGAGACTTTTGGTGACAGTAATGTTGGCCTTCTTACGGGTGATTCTGCTGTAAACAAGGATGCTCAGGTTTTGATTATGACTACGGAGATATTACGCAACATGTTGTATCAGAGTGTTGGTAATGTTTCTTCTGGAAGTGGACTTGTCAATGTTGATGTGATTGTTTTGGACGAAGTTCATTACCTTAGTGACATATCTCGCGGTACAGTTTGGGAAGAAATTGTTATTTATTGCCCAAAAGCAGTTCAACTTATTTGTCTCTCTGCAACCGTTGCAAATCCAGATGAGTTGGCTGGTTGGATTGGTCAGATTCATGGTGGAACAGAGTTGGTAACATCTTCAAAACGCCCAGTTCCTCTGAATTGGCATTTTTCTTTGAAGAATTCCTTATTACCACTTCTTGATGATAAAGGAACACAGATGAACAGGAAGCTGTCACTCAATTATTTAAAACTTCAAGCTGCAGAAGCTAAACCTTACAAGGATGATTGGCCTAGAAAAAGGAATTCCCGGAAACGTGGAACTCGCACAAGCTATGACATCGATGATAGAATGTTGGAACAGCGTTCTCTTTCGAAGAATGACATAAATGCAATTCGTCGATCACAAGTTCCTCAAATAATCGATACTTTATGGCACCTTCAGTCAAGGGATATGCTTCCAGCTGTTTGGTTTATTTTTAGCAGGAAAGGTTGTGATGCAGCTGTGCAATATGTTGAAGATTGCAAACTTTTAGACGAGTGTGAAGCAAGTGAGGTTCTACTAGCTTTGAAAAGGTTCCGCATTCAGTATCCAGATGCTGTCAGAGAAACAGCTGTGAAAGGGCTTTTGCAAGGGGTCGCTGCACATCATGCTGGATGTCTACCACTGTGGAAGGCCTTCATCGAAGAGTTGTTTCAAAGAGGTCTTGTCAAGGTTGTTTTTGCTACCGAAACCCTTGCTGCCGGAATCAACATGCCTGCTAGAACAGCTGTTATTTCATCCCTCAGCAAAAGAAGTGATACTGGGCGCACCTTGTTGACCTCAAATGAACTGCTTCAGATGGCTGGGCGTGCTGGGCGTAGAGGCATTGATGAAAGTGGTCATGTAGTCCTCGTCCAAACTCCTAATGAAGGTGCTGAAGAGTGCTGCAAGGTACTTTTTTCTGGACTTGAGCCTCTGGTGTCGCAGTTTACTGCTTCTTATGGAATGGTTTTGAATCTTCTTGGTGGTGGGAAAGCCCTTCGTAGGTCAAACACATCGGACGAGATGAAAACTTCATCAGGGAAAACTTTGGATGAAGCTAGGAAGTTAATTGAGCAAAGTTTTGGAAATTATGTTAGTAGCAGTGTTATGCTGGCTGCTAAAGAGGAACTTAATAGAATTGAAAAAGAAATTCAGTTGTTGATGTCAGAAATCACTGATGAAGCCATAGATAGAAAAAGTAGGAAGGCTTTATCACAGCGACAATACAAGGAGATTGCAGAATTACAGGAAAATTTAAGGGCAGAGAAACGTATTAGGGCTGAATTGCGAAGACAAAAGGAAACAAAGAGAATATCCGCCTTGAAACCATTATTAGAAGAGTCCGAAAATTTACCATTTTTGTGCTTGCAGTATAGAGATTCTGACGGAGTTCAACATTCAATTCCTGCAGTGTTTTTGGGAAAGGTCGACTCCCTTGGTGCTTTGAAACTCAAAAACATGATCGGTTCTGTCGATTCTTTTGCACTAAATTCAGCAGATGCAGATTCTGAATTGAATGAAGACCCTGTACCATCATATCACGTAGCTCTTGGCTCAGATAACTCTTGGTATCTATTTACAGAAAAGTGGATTAAAACAGTATATGAGACAGGCTTTCCCGATGTTCCGTTAGTTCAAGGGGATACCCGACCTCGAGAAATTATGAGTGATCTCCTTGATAAGGAGGACATGAAGTGGGATAACCTTGCTAACTCTGAACATGGTGGTTTATGGGTCACGGAAGGATCTCTGGAGACATGGTCTTGGAGCTTGAATGTTCCAGGTTTGAGTAGCTTCTCTGAAAATGAAGAGGTGCTACTGAAGTCTCAAGCATACAGAGATGCAGCTGAACAATACAAAGACCAAAGAAGTAAAGTTGCACGCTTGAAAAAGAAGATATCTCGTACTGAAGGCCATAAAGAATATAATAAAATTTTAGACGCAGTCAAGTTTATCGAGGAGAAAATCAAGCGAATGAAGACTAGATCCAAACGTCTGACTAATCGGATAGAACAAATTGAACCCTCAGGTTGGAAGGAGTTTATGCAGGTGAGCAATGTCATACGTGAAACCAGAGCTTTAGATATTAATACACATGTGATATATCCACTAGGGGAAACTGCTTCAGCAATTCGTGGAGAAAATGAGCTATGGCTCGCAATGGTTCTTCGTAGTAAAATTTTAGCAGAACTAAAACCTGCACAACTTGCTGCAGTGTGTGCAGGTTTGGTATCCGAGGGGATTAAAGTCAGACCCTGGAAGAACAACAATTACATTTACGAGCCTTCTGCAACGGTAGTCAATATCATAGGGTTATTGGATGAGCAAAGAAATGCTCTATTGACAATTCAGGAGAAACATGGGGTGACAATATCTTGCTGTTTGGATAGCCAGTTTTGCGGTATGGTTGAAGCTTGGGCTTCTGGGTTGACATGGAGAGAAATAATGATGGACTGTGCAATGGATGATGGTGATCTAGCTCGTCTCCTTCGAAGGACAATTGATCTATTAGCTCAGATTCCTAATTTGCCAGATATTGATCCATTGTTGCAAAAGAATGCAAGGGCTGCTTGTGATGTCATGGATCGGCCTCCAATAAGTGAACTTGCTGGGTAG 3468 0.4233 MAITTKTKLILSLLQPHHHTFSLFQTPTTFSFSLLPNRSLKFPLSFSFKSPPSPIRTFNADDDEDEEEEIDDEDDEEEEDIAADEYDEVVVSGEASDEDEVEVEELGRYDDGFKWQRVEKLCNEVREFGVGIIDVDELASVYDFRIDKFQRQAIQAFLRGSSVVVSAPTSSGKTLIAEAAAVATVARGRRLFYTTPLKALSNQKFREFRETFGDSNVGLLTGDSAVNKDAQVLIMTTEILRNMLYQSVGNVSSGSGLVNVDVIVLDEVHYLSDISRGTVWEEIVIYCPKAVQLICLSATVANPDELAGWIGQIHGGTELVTSSKRPVPLNWHFSLKNSLLPLLDDKGTQMNRKLSLNYLKLQAAEAKPYKDDWPRKRNSRKRGTRTSYDIDDRMLEQRSLSKNDINAIRRSQVPQIIDTLWHLQSRDMLPAVWFIFSRKGCDAAVQYVEDCKLLDECEASEVLLALKRFRIQYPDAVRETAVKGLLQGVAAHHAGCLPLWKAFIEELFQRGLVKVVFATETLAAGINMPARTAVISSLSKRSDTGRTLLTSNELLQMAGRAGRRGIDESGHVVLVQTPNEGAEECCKVLFSGLEPLVSQFTASYGMVLNLLGGGKALRRSNTSDEMKTSSGKTLDEARKLIEQSFGNYVSSSVMLAAKEELNRIEKEIQLLMSEITDEAIDRKSRKALSQRQYKEIAELQENLRAEKRIRAELRRQKETKRISALKPLLEESENLPFLCLQYRDSDGVQHSIPAVFLGKVDSLGALKLKNMIGSVDSFALNSADADSELNEDPVPSYHVALGSDNSWYLFTEKWIKTVYETGFPDVPLVQGDTRPREIMSDLLDKEDMKWDNLANSEHGGLWVTEGSLETWSWSLNVPGLSSFSENEEVLLKSQAYRDAAEQYKDQRSKVARLKKKISRTEGHKEYNKILDAVKFIEEKIKRMKTRSKRLTNRIEQIEPSGWKEFMQVSNVIRETRALDINTHVIYPLGETASAIRGENELWLAMVLRSKILAELKPAQLAAVCAGLVSEGIKVRPWKNNNYIYEPSATVVNIIGLLDEQRNALLTIQEKHGVTISCCLDSQFCGMVEAWASGLTWREIMMDCAMDDGDLARLLRRTIDLLAQIPNLPDIDPLLQKNARAACDVMDRPPISELAG* 1156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1497 1155 Gene3D - 108 325 IPR027417 -
Mtr5g1497 1155 SMART DSHCT_2 980 1154 IPR012961 -
Mtr5g1497 1155 CDD SF2_C_Ski2 395 577 - -
Mtr5g1497 1155 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 154 318 IPR014001 -
Mtr5g1497 1155 Pfam DSHCT (NUC185) domain 984 1150 IPR012961 -
Mtr5g1497 1155 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 412 611 IPR001650 -
Mtr5g1497 1155 PANTHER ATP-DEPENDENT RNA AND DNA HELICASE 45 1151 - -
Mtr5g1497 1155 MobiDBLite consensus disorder prediction 53 80 - -
Mtr5g1497 1155 Coils Coil 926 953 - -
Mtr5g1497 1155 SMART ultradead3 142 332 IPR014001 -
Mtr5g1497 1155 SMART helicmild6 479 565 IPR001650 -
Mtr5g1497 1155 Coils Coil 896 916 - -
Mtr5g1497 1155 Gene3D - 326 596 IPR027417 -
Mtr5g1497 1155 PANTHER DEXH-BOX ATP-DEPENDENT RNA HELICASE DEXH15 CHLOROPLASTIC 45 1151 - -
Mtr5g1497 1155 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 154 579 IPR027417 -
Mtr5g1497 1155 Coils Coil 689 716 - -
Mtr5g1497 1155 Pfam DEAD/DEAH box helicase 149 301 IPR011545 GO:0003676|GO:0005524
Mtr5g1497 1155 Gene3D - 926 1147 - -
Mtr5g1497 1155 MobiDBLite consensus disorder prediction 60 80 - -
Mtr5g1497 1155 Coils Coil 654 674 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1497 Mtr-Chr5 15921530 15929566 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1497 K26077 - gmx:100780908 1781.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g1497 5 15921530 15929566 Mtr5g1497 5 15921530 15929566 ECH