Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1493 ATGAAAACCCAAATCCATTTTCACACCCTTCAACTATTACTATTCACACTCTCTCTCTTTTTGAACCAATGCTTATCTGACCCTGACCCACTTCAAGATTATTGCATTGCAGATAACAAAAACACATTTTTCTTAAATGGTTTACCATGCATTGATCCTAAACAAGCAACTTCATCACATTTTGCAACATCTTCATTATCAAAACCAGGTAACACAACAAACATGTTTGGTTTTAGTGTCACACCAACAAACACTATTAACCTACCTGGGCTTAACACATTGGGCCTAGTTTTAGTTCGTGTCGATATCGCTGGAAATGGGATTGTACCCCCACATTCTCATCCACGGGCCTCAGAAGTTACTACATGTATTAAAGGGCTTTTACTTGTGGGCTTTGTTGATACATCAAATCGTGCATTTACTCAAAATTTGAGCCCAGGTGAATCATTTGTGTTTCCTAAGGGACTTGTGCATTTTTTGTATAATCGTGACTCTAAGCAACCAGCAATTGCAATTTCTGGTCTTAATAGTCAGAATCCAGGGGCACAAATTGCATCAATTGCAACATTTGCTAGTAAACCTTCTATTCCTGATGAAGTTCTTAAGAAGGCTTTTCAAATTAATGGTCAAGAAGTGGATATTATTAGGAAGAAACTTGGTGGTTGA 666 0.3754 MKTQIHFHTLQLLLFTLSLFLNQCLSDPDPLQDYCIADNKNTFFLNGLPCIDPKQATSSHFATSSLSKPGNTTNMFGFSVTPTNTINLPGLNTLGLVLVRVDIAGNGIVPPHSHPRASEVTTCIKGLLLVGFVDTSNRAFTQNLSPGESFVFPKGLVHFLYNRDSKQPAIAISGLNSQNPGAQIASIATFASKPSIPDEVLKKAFQINGQEVDIIRKKLGG* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1493 221 Gene3D Jelly Rolls 26 221 IPR014710 -
Mtr5g1493 221 Pfam Cupin 65 212 IPR006045 -
Mtr5g1493 221 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 12 220 - -
Mtr5g1493 221 SMART Cupin_1_3 64 213 IPR006045 -
Mtr5g1493 221 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 1 MEMBER 1 12 220 - -
Mtr5g1493 221 CDD cupin_OxOx 27 219 - -
Mtr5g1493 221 SUPERFAMILY RmlC-like cupins 27 217 IPR011051 -
Mtr5g1493 221 PRINTS Germin signature 112 132 IPR001929 GO:0030145
Mtr5g1493 221 PRINTS Germin signature 142 162 IPR001929 GO:0030145
Mtr5g1493 221 PRINTS Germin signature 176 191 IPR001929 GO:0030145
Mtr5g1493 221 ProSitePatterns Germin family signature. 107 120 IPR019780 GO:0030145
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1493 Mtr-Chr5 15871977 15873232 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1493 27 220 Miscellaneous Gene Families AT5G39130 45.455 4.33e-53 168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1493 - - lja:Lj2g3v1365980.1 377.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g1493 5 15871977 15873232 Mtr5g1493 5 15871977 15873232 ECH