Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1478 ATGAACATGATGAAGTTATACCAATTTGAATTGCTCTTATCCCTCCTCTTCATCATTGTCAATACAACCCTTTCAGGTTATATCCCTCAATTGTCTCCTTCTCTTGGCAAACAAACAGAAGAGATTCAAGGCCTATCTAAAATCAAACAACATTTGTACCATTTCAAGTACCTCCAAGGATTATATTTGGTTGGCTTTGATGACTATCTAGACAACAAAACAATATCCGCTATTAAGGCCTACCAACAATTTTTCAATCTTCAAGTTACGGGTCACCTAGACACCGAGACTTTACAACAAATCATGTTACCACGATGTGGTGTTCCCGATATAAATCCCGATATAAATCCCGATTTCGGCTTTGCTCGTGCACAAGGAAACAAGTGGTTCCCTAAGGGTACGAAAGAACTTACCTATGGTTTTCTTCCGGAGAGCAAAATCTCAATCGACAAGGTCAATGTATTTAGAAATGCCTTCACACGATGGTCGCAGACCACTAGGGTCCTAAAATTTAGCGAGGCGACTTCATACGATGATGCTGACATTAAGATTGGATTCTACAATATTAGTTACAATTCCAAAGAAGTTATTGATGTTGTGGTGAGTGACTTTTTCATCAACTTGAGAAGTTTTACGATACGTCTGGAAGCTTCAAAGGTCTGGGACTTGGAGACTGTGGCCATGCATCAAATAGGTCATCTACTAGGACTTGATCACTCTTCTGATGTGGAGTCTATTATGTACCCAACAATAGTGCCATTGCATCAAAAGAAGGTGCAGATAACAGTTTCAGATAACCAAGCCATACAACAACTCTACACCAAACAAACCAATCAAGACCGTGATGAACTTGGCTTCTTTGATTATAGTGGAGACTTCTTTGAGTCAAGTTCTGGTCTTCTGAACTCTTTGTCCCTTGGTTTTGCTTTCGTGGCTCTGATGAATTTGGCTTTCTAA 957 0.3971 MNMMKLYQFELLLSLLFIIVNTTLSGYIPQLSPSLGKQTEEIQGLSKIKQHLYHFKYLQGLYLVGFDDYLDNKTISAIKAYQQFFNLQVTGHLDTETLQQIMLPRCGVPDINPDINPDFGFARAQGNKWFPKGTKELTYGFLPESKISIDKVNVFRNAFTRWSQTTRVLKFSEATSYDDADIKIGFYNISYNSKEVIDVVVSDFFINLRSFTIRLEASKVWDLETVAMHQIGHLLGLDHSSDVESIMYPTIVPLHQKKVQITVSDNQAIQQLYTKQTNQDRDELGFFDYSGDFFESSSGLLNSLSLGFAFVALMNLAF* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1478 318 Pfam Matrixin 134 274 IPR001818 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Mtr5g1478 318 ProSitePatterns Matrixins cysteine switch. 104 111 IPR021158 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Mtr5g1478 318 PANTHER MATRIX METALLOPROTEINASE 38 279 - -
Mtr5g1478 318 PRINTS Matrixin signature 101 114 IPR021190 GO:0004222|GO:0006508|GO:0008270
Mtr5g1478 318 PRINTS Matrixin signature 155 170 IPR021190 GO:0004222|GO:0006508|GO:0008270
Mtr5g1478 318 PRINTS Matrixin signature 226 251 IPR021190 GO:0004222|GO:0006508|GO:0008270
Mtr5g1478 318 PRINTS Matrixin signature 261 274 IPR021190 GO:0004222|GO:0006508|GO:0008270
Mtr5g1478 318 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 72 273 - -
Mtr5g1478 318 SMART col_5 125 275 IPR006026 GO:0006508|GO:0008237|GO:0008270
Mtr5g1478 318 Pfam Putative peptidoglycan binding domain 45 100 IPR002477 -
Mtr5g1478 318 PANTHER MATRIXIN PROTEIN 38 279 - -
Mtr5g1478 318 Gene3D Collagenase (Catalytic Domain) 34 281 IPR024079 GO:0008237
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1478 Mtr-Chr5 15628535 15633661 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1478 - - mtr:MTR_5g036083 618.616
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g1478 5 15628535 15633661 Mtr5g1478 5 15628535 15633661 ECH