Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1474 ATGGTACTTCTTCAATGTCCTTGTTGTTGCTACACACAAAACCAACAACAAAAACAAAAAACACAACCTCATTCTCATGATCATATTCATTCAGAATCATCAACTTCTTCTTCTCTTTCTTCACAACCAAGTTTACCTTCTGTTCCTTCTCTCACTTCACAACAATCTCAGGCCACATATCACAAACTTCTAACAACAATCAATGGTCACTCTTCACCCATCTCATCCCTTGCTTTACACTCTAAATTTCTCTTTAGTGGCTCTTCCAATAGTGAAATAAGAAGATTTGACAAAGACCCTTTTGCTCTTCAAGGTTCAAACAATATCAACAACTTGGTAGCAATCAGTAATGGATCAAAATCAACCATTAAGTCAATGATTGTTGTTAATGATATGTTATTTAGTGCTCATCAAGATCATAAAATCCGTGTTTGGAAAATCGAGACAACGATGACTAGTAATAGTACTAATCAAGATCAGAGGCTGTTTAAATGCATAGCAACACTTCCAACATTCAATGATCGTTTTTCGAAGCTTTTTTCATCGAAAAACTACGTTGAAGTTCGGAGACATAAGAAGTATACATGGGTGAATCATATTGATGCTGTTTCTTCTCTTGCTGTTTCGAAAGATGGATTGTTTCTTTACTCGGCTTCGTGGGATAGAACATTCAAAATTTGGAGAGTTTCAGATTTCAAGTGTTTAGAGTCAGTGAAAAGTGCACATGAAGATGCAATCAATGCAATCGTTGTTTCATCTTCTGGGGTTGTTTATACAGGTTCAGCTGATAGAAAGATCAAAATTTGGAGGGAAAAAAACCATGAAGAAGATGAGAAAATGAAAAGTAAAAAGAAAAAGCATTTTTTGGTTGGAACATTGGAGAAGCATAAATCAGCTGTGAATGCATTAGCACTTAACAAAGATGGATCAGTTTTATATTCAGGTGCTTGTGATAGATCAATTTTAGTTTGGGAAAAAAGCAATAGCATTATTCGAAATTGTTCCGGACTAGACCAAGACCCAGACGACGAAAATATGGTGCTAGTTGGTGCCCTAAGAGGGCATACTAAGGCTATATTATGTTTGGTTGTGATGGATGATTTAGTGTGTAGTGGATCAGCTGATAATAGTGTTAGATTATGGAAAAGAGGAATTGATGAAAAAAGTTATACATGTTTGGCTGTTTTGCAAGGTCATAGAAAAGCTGTTAAGTGTTTGGCTATAGCAGATGATTCCAAAAGTGGTAAAAATGGTGGGGTTGATGATGATGGTAGTTCTTATCTTGTTTACAGTGGTAGTCTTGATTGTGATATCAAAGTTTGGCAAATACGCGTTCCCTTGATTTGA 1347 0.3578 MVLLQCPCCCYTQNQQQKQKTQPHSHDHIHSESSTSSSLSSQPSLPSVPSLTSQQSQATYHKLLTTINGHSSPISSLALHSKFLFSGSSNSEIRRFDKDPFALQGSNNINNLVAISNGSKSTIKSMIVVNDMLFSAHQDHKIRVWKIETTMTSNSTNQDQRLFKCIATLPTFNDRFSKLFSSKNYVEVRRHKKYTWVNHIDAVSSLAVSKDGLFLYSASWDRTFKIWRVSDFKCLESVKSAHEDAINAIVVSSSGVVYTGSADRKIKIWREKNHEEDEKMKSKKKKHFLVGTLEKHKSAVNALALNKDGSVLYSGACDRSILVWEKSNSIIRNCSGLDQDPDDENMVLVGALRGHTKAILCLVVMDDLVCSGSADNSVRLWKRGIDEKSYTCLAVLQGHRKAVKCLAIADDSKSGKNGGVDDDGSSYLVYSGSLDCDIKVWQIRVPLI* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1474 448 CDD WD40 63 442 - -
Mtr5g1474 448 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 352 382 - -
Mtr5g1474 448 PANTHER SIMILARITY TO GTP-BINDING REGULATORY PROTEIN AND WD-REPEAT PROTEIN 24 446 - -
Mtr5g1474 448 Gene3D - 179 446 IPR015943 GO:0005515
Mtr5g1474 448 SMART WD40_4 345 382 IPR001680 GO:0005515
Mtr5g1474 448 SMART WD40_4 286 325 IPR001680 GO:0005515
Mtr5g1474 448 SMART WD40_4 189 228 IPR001680 GO:0005515
Mtr5g1474 448 SMART WD40_4 109 146 IPR001680 GO:0005515
Mtr5g1474 448 SMART WD40_4 389 442 IPR001680 GO:0005515
Mtr5g1474 448 SMART WD40_4 231 270 IPR001680 GO:0005515
Mtr5g1474 448 SMART WD40_4 60 97 IPR001680 GO:0005515
Mtr5g1474 448 Gene3D - 49 178 IPR015943 GO:0005515
Mtr5g1474 448 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 293 325 - -
Mtr5g1474 448 ProSiteProfiles Trp-Asp (WD) repeats profile. 293 325 IPR001680 GO:0005515
Mtr5g1474 448 MobiDBLite consensus disorder prediction 20 52 - -
Mtr5g1474 448 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 196 230 - -
Mtr5g1474 448 ProSiteProfiles Trp-Asp (WD) repeats profile. 352 382 IPR001680 GO:0005515
Mtr5g1474 448 ProSiteProfiles Trp-Asp (WD) repeats profile. 196 237 IPR001680 GO:0005515
Mtr5g1474 448 SUPERFAMILY WD40 repeat-like 62 443 IPR036322 GO:0005515
Mtr5g1474 448 Pfam WD domain, G-beta repeat 349 382 IPR001680 GO:0005515
Mtr5g1474 448 Pfam WD domain, G-beta repeat 290 324 IPR001680 GO:0005515
Mtr5g1474 448 Pfam WD domain, G-beta repeat 195 227 IPR001680 GO:0005515
Mtr5g1474 448 Pfam WD domain, G-beta repeat 233 269 IPR001680 GO:0005515
Mtr5g1474 448 Pfam WD domain, G-beta repeat 391 441 IPR001680 GO:0005515
Mtr5g1474 448 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 24 446 IPR045182 -
Mtr5g1474 448 MobiDBLite consensus disorder prediction 32 52 - -
Mtr5g1474 448 ProSiteProfiles Trp-Asp (WD) repeats profile. 239 279 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1474 Mtr-Chr5 15554470 15555954 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1474 117 385 Acyl Lipid Metabolism Gene Families AT3G18860 22.997 1.50e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1474 - - cam:101511687 594.734
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g1474 5 15554470 15555954 Mtr5g1474 5 15554470 15555954 ECH