Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1456 ATGCTCCGAGCAACTGCATTTCCGGCACCGAACAATTCCACGGTGATTCTCTCTCGAAATCACACGTGTCCTTATCTTGAACCCACACGTGTCATTTTCCCTCGCTCTTCTTTCATTTCACGGTTACAATTCCGGCGAACCAGCGTTAAGAGTCTCCTCACCGTACACGGCGGTGGATTCATCCCGGCGGCCGCGAAGAAAGAAGTACGTGGAAGCACAAGCATAGTTGATGAAATTGAGGAAGAATTCGACGAAGAAGGTGAATATGAAGAGGAAGAAGGCGAAGAAGATGAAGAGGTTGATGTGGAAGAAGAAGAAATAGTTGGGTATGATGAAATGAAAGAATGGTGGGAGAAGAAGCCGAAGGGGTTTGGAGAAGGGAAAGTGTATGATACTTCAGTTGAAGATAAGCTGTTTGAAGAAATGCAGAAGAGTAAACAAGCTCAAGCTCTTAATTTGAAAAAGCTTAAAACCAATCCTATCAAAAATAATGTCACAAAGAAGATAGATGAAATAGTTGTTCCTGTCCGAAGCAGAGTGCGCTTGGTGAATTTACCAAAGAAAAGGAAAATTGACAGGGATTTGAAATCAGCTTTTCAAGGGATTCCTGGCATAACAAATATAGTCCCTGCTGTTATCGGAAACAAGAAGACAAGGGATCCTGTCTGCAAGGGTTTTGCTTTTGTGGATTTCAAGCATGAAGATGATGCAATTAGGTTTGTAGAGTTATACACAGGACAAACTATTACTTTTGGCAAAATTCAGAAGCCGATAAAATGTGAACTTGTAAATGCACAGTCCTCCTCTCCTCCGGGATTAAACCAAAATATCAACACTGCTCTACCTCTCCTGCCCTCCTTTGAAGAAGATTCAAATGAGGATTCCAATATCGATGATTCTGCCTTCAATACATGGGATGAGACTGAAGTAGATGATTCGGATGAGCTACAGGAAAGTGACGGGGAGAGTCAAGAGTTTGCCACTGTGCTGACGGTGGATAGTGATGACAGCGTACAAATGACGAATGGTTCTGAAATCGAATCACTTCTCTCTAAGCAGGTTGACAGAAAACCCTCAGCTGATAAGAAGTCAGCTGTCAACGTTAAACAAGAGAATGCTCCTAAGAAAAAATCTAATCAAAAAGAGAACACGAAAAAGGTTTTAGATGTTCCTGGATCTGCAAAAAGGTTAAAGATTAAGGAAAAGGCTGTATTAAGTGATGTTTTCTCCAAGTACGGATCAAAAGCTGCCCTTGCTTCAAAGGAGAGTTAG 1272 0.4175 MLRATAFPAPNNSTVILSRNHTCPYLEPTRVIFPRSSFISRLQFRRTSVKSLLTVHGGGFIPAAAKKEVRGSTSIVDEIEEEFDEEGEYEEEEGEEDEEVDVEEEEIVGYDEMKEWWEKKPKGFGEGKVYDTSVEDKLFEEMQKSKQAQALNLKKLKTNPIKNNVTKKIDEIVVPVRSRVRLVNLPKKRKIDRDLKSAFQGIPGITNIVPAVIGNKKTRDPVCKGFAFVDFKHEDDAIRFVELYTGQTITFGKIQKPIKCELVNAQSSSPPGLNQNINTALPLLPSFEEDSNEDSNIDDSAFNTWDETEVDDSDELQESDGESQEFATVLTVDSDDSVQMTNGSEIESLLSKQVDRKPSADKKSAVNVKQENAPKKKSNQKENTKKVLDVPGSAKRLKIKEKAVLSDVFSKYGSKAALASKES* 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1456 423 CDD RRM_SF 180 249 - -
Mtr5g1456 423 MobiDBLite consensus disorder prediction 352 392 - -
Mtr5g1456 423 SUPERFAMILY RNA-binding domain, RBD 175 273 IPR035979 GO:0003676
Mtr5g1456 423 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 13 422 - -
Mtr5g1456 423 MobiDBLite consensus disorder prediction 286 324 - -
Mtr5g1456 423 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 193 249 IPR000504 GO:0003723
Mtr5g1456 423 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 178 265 IPR000504 GO:0003723
Mtr5g1456 423 MobiDBLite consensus disorder prediction 304 321 - -
Mtr5g1456 423 MobiDBLite consensus disorder prediction 80 100 - -
Mtr5g1456 423 Gene3D - 182 270 IPR012677 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1456 - - mtr:MTR_5g035330 758.444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g1456 5 15277673 15281058 Mtr5g1456 5 15277673 15281058 ECH