Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1428 ATGCTATGCTCTTTAATCCGTTTGCGCCGTAACATTCCTTCTTCTACAACCTCACTCTTTCTCCACATCGGTAACCGTTTCAATTTCTCATCCTCCGCCGCCGCTATGGTGGTCGCTCACCCCAAAGACGAATCCTACCTAGCCGCGACAATCCCTAAGCGCGTCCAAATCTTCGAGGCGCTTCAAGCTGAACAACAGACTCGACGTCTTTCACTCTCTCCCGATCCGATTAAGGTTACACTTCCCGACGGAAACGTGAAGGAAGGGAAGAAATGGCAGACGACTCCGTTTGATATTGCGCGTGAGATTTCGAAGAATTTGGCGAACAATGCTCTTATTTCTAAGGTTAATGGTGTTCTTTGGGATATGAATCGGCCTCTTGAAGAGGATTCATCGCTGCAGTTGTTTAAGTTTGATGATGATGAAGGGAGAGATACTTTTTGGCATTCTAGTGCTCATATTCTTGGACAGTCTCTTGAGACGGAGTATGGATGCAAGCTTTGCATTGGACCCTGCACAACTAGAGGAGAGGGATTCTATTATGATGCATTTTATGGTGACTTGGGTTTGAATGATGATCACTTTAAACAAATTGAAGCTGTAGCGTTGAAAGCTGTTGCGGAAAAACAACCCTTTGAGCGCATTGAAGTGACACGCGATCAGGCACTTGAGATATTTTCTGATAATAAGTTTAAGGTCGAAATTATCAATGATCTGCCCGCTGATAAGACTATAACAGTGTACAGATGTGGACCCCTCGTTGATTTGTGTCGAGGACCTCATATTCCTAATACATCCTTTGTCAAAGCAATTGCATGTTTGAAGGCTTCGTCAGCATATTGGAGGGGGGACAAAGATAGAGAAAGTTTACAAAGAGTTTATGGTATATCTTATCCTGACAATAAGAGTTTAAAGGAATATTTGCTTAGGCTTGAAGAGGCTAAAAAGTATGATCATAGGATTGTAGGAGTGAAACAGGAGCTTATTTATCATCATGAGTGGAGCCCGGGAAGCTGGTTTTTTCTTCCACATGGTGCTCGGATCTACAACAAACTCATGAACTTCATTCGAGATCAGTACAGAGACCGGGGCTATCAAGAGGTTATATCACCCAATGTCTTCAACATGGACCTGTGGGTGCAATCTGGTCATGCGGCAAATTATAAAGAGGATATGTTTGTCTTGGAGATCGACAAACAAGAGTTTGGTTTGAAGCCGATGAATTGCCCAGGGCACTGCTTGATGTTTAAACACCGGGTTCGATCATATAGAGAACTTCCTCTCCGTTTTGCTGATTTTGGGGTTTTGCATCGAAATGAGGCCAGTGGTGCCCTGAGTGGATTAACACGTGTTAGGAGATTTCAGCAGGATGATGCACATATTTTCTGTCGTGAGTCCCAGATAAAAGATGAAGTCAGAAATGCCTTGAACTTCATCGATCATGTCTATAAAATATTTGGTTTCTCATATGAACTGAAGCTTTCAACGAGACCAGAGAAATACCTTGGAAATATTGAAACGTGGGAGAAGGCTGAAGCTTCTCTCAAGGAAGCTTTGGATGAGTTTGGCAAGCCATGGCAGTTGAATGAAGGGGATGGTGCATTTTATGGACCAAAGATAGACATCAGTGTATCTGATGCATTGAGAAGGAAGTTCCAGTGTGCAACTCTACAGCTTGACTTCCAGCTTCCTGATCGTTTTAAGTTGGAATTCTCAGCTGAGGATGAAGCCAAAATTGAGAGACCTGTTATGATACATAGAGCCATTCTAGGATCTGTTGAACGCATGTTTGCCATACTTTTAGAGCACTACAAGGGTAAATGGCCCTTCTGGCTCAGTCCTCGGCAAGCAATTCTCTGCCCTGTCTCGGAGAAATCACAAGCGTATGCACTGCAGGTACGAGATCAGATCCACCAAGCAGGATATCACGTAGATGCTGATACAACTGACAGGAAGATTCAGAAGAAGGTAAGAGAAGCTCAGTTAGCACAATACAACTACATCTTGGTTGTTGGCGAAGAGGAAGCTAAGACAGGACAGGTGAGTGTACGAGTCAGGGATAAGGCAGACCACAGCGTCATGACTATTGAGAACCTGCTCGAACACTTCAAAGACGAGGTTGACGCCTTCCACTGA 2136 0.4391 MLCSLIRLRRNIPSSTTSLFLHIGNRFNFSSSAAAMVVAHPKDESYLAATIPKRVQIFEALQAEQQTRRLSLSPDPIKVTLPDGNVKEGKKWQTTPFDIAREISKNLANNALISKVNGVLWDMNRPLEEDSSLQLFKFDDDEGRDTFWHSSAHILGQSLETEYGCKLCIGPCTTRGEGFYYDAFYGDLGLNDDHFKQIEAVALKAVAEKQPFERIEVTRDQALEIFSDNKFKVEIINDLPADKTITVYRCGPLVDLCRGPHIPNTSFVKAIACLKASSAYWRGDKDRESLQRVYGISYPDNKSLKEYLLRLEEAKKYDHRIVGVKQELIYHHEWSPGSWFFLPHGARIYNKLMNFIRDQYRDRGYQEVISPNVFNMDLWVQSGHAANYKEDMFVLEIDKQEFGLKPMNCPGHCLMFKHRVRSYRELPLRFADFGVLHRNEASGALSGLTRVRRFQQDDAHIFCRESQIKDEVRNALNFIDHVYKIFGFSYELKLSTRPEKYLGNIETWEKAEASLKEALDEFGKPWQLNEGDGAFYGPKIDISVSDALRRKFQCATLQLDFQLPDRFKLEFSAEDEAKIERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAILCPVSEKSQAYALQVRDQIHQAGYHVDADTTDRKIQKKVREAQLAQYNYILVVGEEEAKTGQVSVRVRDKADHSVMTIENLLEHFKDEVDAFH* 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1428 711 PRINTS Threonyl-tRNA synthetase signature 404 432 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Mtr5g1428 711 PRINTS Threonyl-tRNA synthetase signature 437 460 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Mtr5g1428 711 PRINTS Threonyl-tRNA synthetase signature 538 566 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Mtr5g1428 711 PRINTS Threonyl-tRNA synthetase signature 582 595 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Mtr5g1428 711 PRINTS Threonyl-tRNA synthetase signature 609 621 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Mtr5g1428 711 ProSiteProfiles TGS domain profile. 75 137 IPR004095 -
Mtr5g1428 711 SUPERFAMILY Class II aaRS ABD-related 602 708 - -
Mtr5g1428 711 PANTHER THREONINE-TRNA LIGASE 37 710 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Mtr5g1428 711 Gene3D - 75 136 IPR012675 -
Mtr5g1428 711 CDD ThrRS_anticodon 614 704 - -
Mtr5g1428 711 TIGRFAM thrS: threonine--tRNA ligase 148 706 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Mtr5g1428 711 Gene3D - 608 711 IPR036621 -
Mtr5g1428 711 SUPERFAMILY ThrRS/AlaRS common domain 139 316 IPR018163 GO:0000166
Mtr5g1428 711 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 343 609 IPR006195 -
Mtr5g1428 711 Pfam Anticodon binding domain 616 705 IPR004154 -
Mtr5g1428 711 CDD ThrRS_core 318 614 IPR033728 -
Mtr5g1428 711 SUPERFAMILY TGS-like 77 137 IPR012676 -
Mtr5g1428 711 Gene3D - 140 298 - -
Mtr5g1428 711 PANTHER THREONINE--TRNA LIGASE, CYTOPLASMIC 37 710 - -
Mtr5g1428 711 Pfam TGS domain 77 137 IPR004095 -
Mtr5g1428 711 CDD TGS_ThrRS 77 142 - -
Mtr5g1428 711 Pfam tRNA synthetase class II core domain (G, H, P, S and T) 397 604 IPR002314 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Mtr5g1428 711 Pfam Threonyl and Alanyl tRNA synthetase second additional domain 245 294 IPR012947 GO:0004812|GO:0005524|GO:0043039
Mtr5g1428 711 Hamap Threonine--tRNA ligase [thrS]. 142 709 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Mtr5g1428 711 SMART tRNA_SAD_4 245 294 IPR012947 GO:0004812|GO:0005524|GO:0043039
Mtr5g1428 711 Gene3D Bira Bifunctional Protein; Domain 2 300 607 IPR045864 -
Mtr5g1428 711 SUPERFAMILY Class II aaRS and biotin synthetases 318 601 IPR045864 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1428 Mtr-Chr5 15031200 15042922 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1428 K01868 - gmx:100812652 1305.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g1428 5 15031200 15042922 Mtr5g1428 5 15031200 15042922 ECH