Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1425 ATGAATCCTTTCTCTTCAGGAACGCGTTTGAGGGACATGATTCGGGCCATACGTGCATGCAAGACTGCAGCAGAAGAGCGCGGCGTTGTAAGAAAAGAATGCGCAGCCATTCGTGCTTCAATAAATGAAAATGACCAAGACTACAGGCATCGTAATATGGCTAAGCTAATGTTTATCCACATGCTTGGATACCCAACACATTTCGGTCAAATGGAGTGTCTCAAGTTGATAGCATCCCCTGGATTTCCGGAGAAGAGAATAGGTTATCTTGGCCTCATGTTGCTTCTTGATGAAAGACAAGAAGTTCTAATGTTGGTCACCAATTCTTTGAAACAAGATCTTAATCATACAAATCAGTATATAGTGGGACTTGCACTCTGTGCTTTAGGAAACATTTGTTCAGCAGAAATGGCTCGTGATCTTGCACCAGAGGTTGAGAGATTGCTACAATTTCGTGATCCCAATATTCGGAAGAAGGCAGCATTGTGCTCTATAAGGATCATAAAGAAAGTTCCAGACTTGGCAGAAAATTTTATCAATCCTGCTACTTCATTACTTAGGGAGAAACACCATGGAGTTTTAATTACTGGAGTTCAGCTTTGTACAGATCTGTGTAAAACTAGCACAGAAGCTCTTGAACATATTAGGAAGAAATGCACAGATGGTTTGGTCAGAACTCTCAAAGATCTAGCGAACAGTCCTTATTCGCCAGAGTATGATATTGCTGGCATCACAGACCCATTTCTCCACATTAGGTTGCTTAAACTTCTGCGAGTGTTAGGTGAAGGTGATGCTGATGCTAGTGACTCTATGAATGACATACTTGCCCAGGTGGCTACAAAAACCGAGTCAAATAAAGTTGCAGGGAATGCCATTTTATATGAGTGTGTTCAAACGATAATGAGCATTGAAGATAACGGTGGCTTACGCGTACTTGCCATCAATATCCTGGGAAGATTCTTGTCAAACCGCGACAACAATATCAGATACGTGGCATTAAACATGCTAATGAGGGCTGTAACTGCTGATGCTCAGGCAGTGCAGAGGCACCGTGCAACAATTCTAGAATGTGTGAAGGATTTAGATGCTTCAATTCGGAAAAGAGCCCTTGAACTTGTATATGTTCTGGTAAATGAAACTAATGTGAAGCCTTTAGTGAAAGATCTTGTAGATTATCTGGAAGTCAGTGATCTTGATTTCAGAGGAGACCTAACTACCAAAATATGCTCCATAGTTGCAAAGTTTTCCCCAGAGAAGATCTGGTACATTGATCAGATGCTGAAGGTTCTGACTGAGGCTGGAAATTTTGTAAAAGATGAAGTATGGTATGCCTTAATTGTTGTGATAAGCAATGCTTCCGAGCTTCATGGATATTCAGTAAGAGCATTATACAGGGCATTTCAAACGTCTGCTGAGCAGGAGACTCTAGTTCGAGTTACAGTGTGGTGCATTGGGGAGTATGGTGACATGTTAGTCCATAATGTTGGAATGCTTGGCATAGAAGATCCAATAACAGTGACTGAGTCAGATGCAGTGGATGTTGTAGAGATTGCTATAAAACGCCATGCATCAGATCTTACTACAAAAGCAATGTCTTTGGCTGCCTTATTAAAGCTCTCTTCACGTTTCCCTTCTTGTTCAGAGAGGATCGAGGAAATTATTGTACAGTTCAAAGGGAACCTTGAGCTAGAATTGCAGCAGAGAGCTATTGAATTCAACTCGATTATTGCTAAGCACCAAAATATTAGATCTACTCTTGTAGAAAGGATGCCAGTTTTGGATGAGGCCACTTTCATAGGTAGGAGGGCTGGGTCTTTACCAGGTGCCGCTTCTACAGCAAATGCACCTTCAGTCAGTCTCCCGAATGGGGTAGCCAAACCTGCAGCTCCTCTTGTAGATCTACTTGATCTAAGTTCTGATGATGCTCCAGCACCTAGCTCTTCTGGTGGCGATTTTCTTCAGGACCTTCTTGGTGTTGATCTATCTCCAGCATCACAGCAATATGGTGTTGGTCAAGCATCAAACAGTGGCACAGATGTTCTTATGGATCTTTTGTCGATTGGATCGCCTTCTGCCCCGAGCAGCTCATCTACAGTAGACATCTTGTCCTTAAGTGCTAGTAATAATGCACCTGCTTCACCATTGGATGATCTCTCACCACTTCCACCTTCTTCAAGAGCTACTTCAAATGCTGGTTCAATGATGGATTTATTGGGTGGTATTTCCTCCAGTCCGGCAACAGAAAACAATGGACCAGTTTACCCGTCTGTAACTGCTTTTGAGAGCAGCTCCTTGAGGTTGACATTCAATTTCTCAAAACAACCAGGAAACCCACAAACAACAGTTATCCAAGCTACCTTTACAAATTTGTCCTCCAATACATATACAGATTTTGTTTTCCAGGCTGCAGTCCCCAAGTTTCTACAATTGCACTTGGATCCAGCTAGCGGCAATACTCTCCCTGCTGCTGGAAATGGGTCGGTCACGCAAACTTTGAGAGTTACTAATAGCCAACATGGAAAGAAATCTCTTGTCATGCGCATAAGGATAGCATACAAGGTAAATGGCAAAGATACATTGGAGGAAGGACAAATCAGTAATTTTCCCAAGGGTCTGTGA 2619 0.4242 MNPFSSGTRLRDMIRAIRACKTAAEERGVVRKECAAIRASINENDQDYRHRNMAKLMFIHMLGYPTHFGQMECLKLIASPGFPEKRIGYLGLMLLLDERQEVLMLVTNSLKQDLNHTNQYIVGLALCALGNICSAEMARDLAPEVERLLQFRDPNIRKKAALCSIRIIKKVPDLAENFINPATSLLREKHHGVLITGVQLCTDLCKTSTEALEHIRKKCTDGLVRTLKDLANSPYSPEYDIAGITDPFLHIRLLKLLRVLGEGDADASDSMNDILAQVATKTESNKVAGNAILYECVQTIMSIEDNGGLRVLAINILGRFLSNRDNNIRYVALNMLMRAVTADAQAVQRHRATILECVKDLDASIRKRALELVYVLVNETNVKPLVKDLVDYLEVSDLDFRGDLTTKICSIVAKFSPEKIWYIDQMLKVLTEAGNFVKDEVWYALIVVISNASELHGYSVRALYRAFQTSAEQETLVRVTVWCIGEYGDMLVHNVGMLGIEDPITVTESDAVDVVEIAIKRHASDLTTKAMSLAALLKLSSRFPSCSERIEEIIVQFKGNLELELQQRAIEFNSIIAKHQNIRSTLVERMPVLDEATFIGRRAGSLPGAASTANAPSVSLPNGVAKPAAPLVDLLDLSSDDAPAPSSSGGDFLQDLLGVDLSPASQQYGVGQASNSGTDVLMDLLSIGSPSAPSSSSTVDILSLSASNNAPASPLDDLSPLPPSSRATSNAGSMMDLLGGISSSPATENNGPVYPSVTAFESSSLRLTFNFSKQPGNPQTTVIQATFTNLSSNTYTDFVFQAAVPKFLQLHLDPASGNTLPAAGNGSVTQTLRVTNSQHGKKSLVMRIRIAYKVNGKDTLEEGQISNFPKGL* 873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1425 872 SUPERFAMILY Clathrin adaptor appendage domain 728 870 IPR013041 -
Mtr5g1425 872 PIRSF AP1_gamma 6 872 IPR017107 GO:0005794|GO:0016192|GO:0030121
Mtr5g1425 872 PANTHER AP-1 COMPLEX SUBUNIT GAMMA 5 871 - -
Mtr5g1425 872 PANTHER ADAPTIN, ALPHA/GAMMA/EPSILON 5 871 - -
Mtr5g1425 872 Gene3D - 2 594 IPR011989 -
Mtr5g1425 872 Pfam Adaptin N terminal region 27 578 IPR002553 GO:0006886|GO:0016192|GO:0030117
Mtr5g1425 872 ProSiteProfiles Gamma-adaptin ear (GAE) domain profile. 752 869 IPR008153 -
Mtr5g1425 872 Gene3D - 740 871 - -
Mtr5g1425 872 SUPERFAMILY ARM repeat 25 593 IPR016024 -
Mtr5g1425 872 Pfam Adaptin C-terminal domain 755 869 IPR008152 GO:0006886|GO:0016192
Mtr5g1425 872 MobiDBLite consensus disorder prediction 711 730 - -
Mtr5g1425 872 SMART alpha_adaptinc2 749 869 IPR008152 GO:0006886|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1425 Mtr-Chr5 14997220 15011227 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1425 K12391 - gmx:100802164 1479.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g1425 5 14997220 15011227 Mtr5g1425 5 14997220 15011227 ECH