Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1416 ATGGCGGATTCATCTTCTCCCGCAACCCTACAACCCAATCCTCAAACCAATTCAGAACCTTCTCCTCCTAACCCAATCCTCAATCCACCCGATCCAATTCCCCAATCATCCCAATCGCAATCACAATCTTCAACACCATCACCAGTCCCCATCGTTACAAACCTTAATCCCAATCCACAGTCGCTACCTCCACCGCCTACTTTATATGCTCCGCCGCAAATTCCCGGTGTTCTTCCTCCTTCTGCACCGTCCTTCCGACCGCTTGGTGCTCAATTACCGCAGTTCACTCCTCTGCCGAATCCACCTGGTGGTTATCAAAACCCTAATCAACCTCCTGGTGTATCCGGTTCGGTGCAGGTTCCGGTTCCGATGCCGCAGATGCAACCTATGATGTCGTATCAAATTCCCGGGAGTAATCCTGCAATGAGACCTTTTGCTCCGATGCCGAATGGTTATGCTATGCATCCTCAAGGAACTATTAACCCTGCAGGAATTCCTCGTTATCCACCTCCTTATGGAACCATGGTTCGTCCTGTATATCCTCCTCGCCTTCCTGGAGCAATCAATGTACTTCCAGTATCACGCCCGCCTGTTGCAGGGATCCCTTCAATTCGCCCTATTATTCCTCCTGTTGTCAGACCTGTGGTTCCTCCTAGTGTTACTCCAGCTGAGAAGCAACATACCACTGTTTACATTGGCAAGATTGCACCAACCGTGGAGAATGAGTTCATGCTTTCTCTCCTTAAATTGTGTGGGAATATCAAGAGCTGGAAAAGACCTCAGGATTTATCGAGTGGGACGCCTAAAAGTTTTGGGTTTTATGAGTTCGATACTGCTGAAGGGGTTCTCCGTGCTTTACGTCTCCTTACCAAATTGAATATTGATGGCCAAGAATTAGTGATCAATGTAGATGAAGCTATGAGAAACTATCTGGAGCGGTATGTACAAAAGAAAACTGACAATTCAAAGGAAAAGGAAACTCAGGCAGCAGAAGTTGGAAAAGATCAAGTTGCGAAAACTTCTGATGTAAATGAGGAAGCAAAGCCTGATGTGGAGCACTCAAATAAGGAGGAGGGTAATGATTCAGTGAACAAGAAAACCCATGATGTGGCAACTTTTGGGATTGTTACAGATGAAGATAGGGAAGTTGATCGAGATGCTTTAGAAAAAATCAAGCAGATGATAGAGGAGAGGCTGAACTCAAGACCTTTGCCTCCACCACCTCCACTGCCAACTGGTGATGGTTCTGTGGATTCAACTTCCGAACAACCTACTAAAACAAGAGAAGGAGACTCTGATGTGGATACAAAGAATGAATCGGGTGAAGAGAAAAATGAGAGAGAGACAAACGGTGATAAGAAACCAACCAGTGAACATGATAGACCCGAAACCCCTGATAGAAGGCATGACAGGAAAAGCAGGGAGAGAGACAGGGAACGGGAACTGAAACGAGAAAAGGAAAGAGTACTTGAGAGATATGAAAGAGAAGCTGAGCGGGATCGTATTCGGAAAGAGAGGGAACAAAAACGGAGGATTGAGGAAGTTGAGCGTCAGTTTGAATTACAATTGAAGGAATGGGAGTATAGAGAAAGAGAGAAAGAAAAAGAACGTCAATATGAAAAAGAGAAGGAGAAGGACAGAGAACGCAAACGAAGAAAGGAAATACTTTATGATGAAGAGGATGATGATGGGGATTCTAGGAAGAGGTGGCGTAGAAATGCGATAGAGGAGAAGAGAAATAAGAGGCTGCGAGAAAAGGAAGATGACCTGGCTGACAAACAAAAAGAAGAGGAGGAAATTGCCGAGGCCAAGAAGAGAACTGAGGAGGATCAACAACTGAAGCGGCAGAGAGATGCATTGAAGCTGTTGACAGAGCATATTGTAAATGGCAGGGACGAAACTATGGCTACCAGAGAGATTACTAATGAAATGAACAATATTGTTGCTGTACAAGACACTGTAGCTGATTTTAATCATGAAGGTGATGCTAATGTACTAAATACTACCCACGATGAATCCACCATGGCATCTGTAGCCACAACTGATACCCAGTCAAGTGGAAATGCTCCTTTGAAGAAGTTGGGATTTGGTCTGGTTGGCTCTGGAAAAAGAACAACTGTCCCTTCTGTTTTCCATGAAGATGAAGACGATGATGCACACAAGGATAAAAAACTGAGGCCTTTGGTTCCAATTGATTACTCAACAGAAGAGTTGCAGGCTGTTGAATCTACTCCTTCTGGGCCAACACCACCCAATTTGGCTGCAGCTGCAGAGTTTGCAAAGCGTATATCTAGTACCAATTTCAAGGAAGAGAGGCTGGATGGAGAACGGGATAGAAGTAGGCATTCAAATGAGAAGTCCAACCACCGGGACAGGGATAGGAGTGATGAAGACGGCACTAACCACAGAGATGAACACAGGGAGAGAAATTCTGACCGTGACAGGGATCGAGATCATGGGTTGGAGAAACACAAGACTTATGATAACAGCAGGAGGCTCTTGGATGCAAAACAGTTGATTGATATGATACCAAAGACCAAGGAGGAGTTGTTCTCATATGAGATAGACTGGGCAGCGTACGACAAGCATCAATTACATCAACGAATGAGACCGTGGATTTCAAAGAAAATTAAAGAGTTTTTAGGGGAAGAAGAAAATACATTGACAGATTATATTGTCTCAAGTACACAAGAACACGTGCAAGCATCTCAAATGCTAGAGCGTCTTCAGGTCATTTTAGATGAAGAGGCTGAAATGTTTGTTCTCAAGATGTGGAGGATGCTTATCTTTGAAATAAAGAAGGTAGAGACAGGGCTTGCTTCGAAGTCCAAATCATGA 2838 0.444 MADSSSPATLQPNPQTNSEPSPPNPILNPPDPIPQSSQSQSQSSTPSPVPIVTNLNPNPQSLPPPPTLYAPPQIPGVLPPSAPSFRPLGAQLPQFTPLPNPPGGYQNPNQPPGVSGSVQVPVPMPQMQPMMSYQIPGSNPAMRPFAPMPNGYAMHPQGTINPAGIPRYPPPYGTMVRPVYPPRLPGAINVLPVSRPPVAGIPSIRPIIPPVVRPVVPPSVTPAEKQHTTVYIGKIAPTVENEFMLSLLKLCGNIKSWKRPQDLSSGTPKSFGFYEFDTAEGVLRALRLLTKLNIDGQELVINVDEAMRNYLERYVQKKTDNSKEKETQAAEVGKDQVAKTSDVNEEAKPDVEHSNKEEGNDSVNKKTHDVATFGIVTDEDREVDRDALEKIKQMIEERLNSRPLPPPPPLPTGDGSVDSTSEQPTKTREGDSDVDTKNESGEEKNERETNGDKKPTSEHDRPETPDRRHDRKSRERDRERELKREKERVLERYEREAERDRIRKEREQKRRIEEVERQFELQLKEWEYREREKEKERQYEKEKEKDRERKRRKEILYDEEDDDGDSRKRWRRNAIEEKRNKRLREKEDDLADKQKEEEEIAEAKKRTEEDQQLKRQRDALKLLTEHIVNGRDETMATREITNEMNNIVAVQDTVADFNHEGDANVLNTTHDESTMASVATTDTQSSGNAPLKKLGFGLVGSGKRTTVPSVFHEDEDDDAHKDKKLRPLVPIDYSTEELQAVESTPSGPTPPNLAAAAEFAKRISSTNFKEERLDGERDRSRHSNEKSNHRDRDRSDEDGTNHRDEHRERNSDRDRDRDHGLEKHKTYDNSRRLLDAKQLIDMIPKTKEELFSYEIDWAAYDKHQLHQRMRPWISKKIKEFLGEEENTLTDYIVSSTQEHVQASQMLERLQVILDEEAEMFVLKMWRMLIFEIKKVETGLASKSKS* 946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1416 945 Gene3D PWI domain 824 941 - -
Mtr5g1416 945 Pfam PWI domain 868 931 IPR002483 GO:0006397
Mtr5g1416 945 MobiDBLite consensus disorder prediction 530 613 - -
Mtr5g1416 945 Coils Coil 529 549 - -
Mtr5g1416 945 PANTHER SPLICING FACTOR PWI DOMAIN-CONTAINING PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN 1 944 - -
Mtr5g1416 945 MobiDBLite consensus disorder prediction 57 82 - -
Mtr5g1416 945 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 230 299 IPR000504 GO:0003723
Mtr5g1416 945 Coils Coil 472 525 - -
Mtr5g1416 945 MobiDBLite consensus disorder prediction 318 365 - -
Mtr5g1416 945 ProSiteProfiles PWI domain profile. 848 945 IPR002483 GO:0006397
Mtr5g1416 945 SMART pwi_2 861 934 IPR002483 GO:0006397
Mtr5g1416 945 MobiDBLite consensus disorder prediction 16 32 - -
Mtr5g1416 945 MobiDBLite consensus disorder prediction 1 15 - -
Mtr5g1416 945 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 228 308 IPR000504 GO:0003723
Mtr5g1416 945 SUPERFAMILY RNA-binding domain, RBD 212 305 IPR035979 GO:0003676
Mtr5g1416 945 MobiDBLite consensus disorder prediction 424 508 - -
Mtr5g1416 945 MobiDBLite consensus disorder prediction 765 824 - -
Mtr5g1416 945 Coils Coil 573 613 - -
Mtr5g1416 945 SUPERFAMILY PWI domain 867 933 IPR036483 GO:0006397
Mtr5g1416 945 MobiDBLite consensus disorder prediction 395 508 - -
Mtr5g1416 945 MobiDBLite consensus disorder prediction 708 728 - -
Mtr5g1416 945 MobiDBLite consensus disorder prediction 33 56 - -
Mtr5g1416 945 CDD RRM_RBM25 228 311 IPR034268 -
Mtr5g1416 945 Gene3D - 220 339 IPR012677 -
Mtr5g1416 945 SMART rrm1_1 229 302 IPR000504 GO:0003723
Mtr5g1416 945 MobiDBLite consensus disorder prediction 318 367 - -
Mtr5g1416 945 MobiDBLite consensus disorder prediction 94 108 - -
Mtr5g1416 945 MobiDBLite consensus disorder prediction 1 118 - -
Mtr5g1416 945 PANTHER SPLICING FACTOR PWI DOMAIN-CONTAINING PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN 1 944 - -
Mtr5g1416 945 MobiDBLite consensus disorder prediction 702 728 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1416 K12822 - gmx:100809428 1120.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g1416 5 14842825 14850624 Mtr5g1416 5 14842825 14850624 ECH