Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1397 ATGAGTGGTTTTAGCTTAAGAGGCTTCACATACATGTTACTCATTGCATTTCTCATCTGGTCTTCCAATTTTGAGTGCTGCATTGCAAGAAGAGGTAAGCATTTGAGACAAAGTAGAACTTTCTCATCCTCTTTGTTTAAGAAGAAAGGTAAGAGTTATAATGGAAATAGTCATAATAAAAATCACCATAGTGGAGGATCAAATTCAAAACCAAAGTCTCCACCACATAAAAGTACTCCACCATTACCAAAATCTCCTCCATCACATAAAAGTGTTCCATCTTCTCCACCAATTTCTAAACCAAAATACTCTCCTTCAATTCCACCACCTAAAGCTAACAATGGTGTGCATTCAACTTTCTTCAATGTGCTAGATTATGGAGCTAAAGGAGATGGTAACACCGATGACACAAAGGCATTCCAAGCAACATGGGCAGCTACATGTAAAGTAGAAGCATCAACAATGGTGATTCCAGCAAATTACATCTTCTACGTGGGACCAATTTCATTCTCTGGCCCATATTGTAAGGCCAACATTGTTTTTCAGCTTGATGGTACAATTATTGCTCCAACAAACCCAAATGCTTGGAGTGGAGTAACACTACAGTGGCTGGAATTCACAAAACTAGAAGGAATTACCATTCAAGGAAATGGTGTCATTGATGGAAGAGGCTCAGTTTGGTGGCAAGATTTCCCATATGACAATCCAATTGATGATGAAGAAAAGCTTATAGTTCCTTTAAATCAAACTCAGAAGCCTCCAATGCCGGTACAAAATGAGATGGGAAGAAAAATGCCAAGCAACAAGCCAACGGCACTAAGGTTTTATGGTAGCTATGGTCCAACTGTCACGGGTATAACAATTCAGAATAGTCCTCAGTGTCATCTAAAGTTTGACAATTGCAATGGGGTCCTTGTTCATGATGTGAGTATTTCATCTCCTGGTGATAGCCCTAATACCGATGGAATTCACCTTCAGAATTCCAAAGATGTGTTGATTCACAGCAGCAAGTTAGCATGTGGAGATGATTGCATTTCTATACAAACTGGATGCTCAAATGTATATGTACACAATGTCAACTGTGGTCCGGGACATGGAATCAGCATTGGAAGTTTAGGAAAAGATAACACCAGAGCCTGTGTCTCAAACATTACTGTCAGAGATGTCAACATACACGACTCAATGAATGGTGTTAGAATCAAAACATGGCAGGGTGGATCTGGTTCAGTACAGGGAGTATTATTCTCAAACATACAAGTTTCAGAAGTTCAACTTCCAATTGTAATAGACCAATTCTATTGTGATAAAAGGGTATGCACAAATCACACATCAGCAGTGTCTCTAGCAGGAATCAACTACGAAAGAATAAAAGGAACATACACAGTTAAACCAGTACACTTTGCTTGCAGTGATAGCCTGCCATGTGTAGATGTTTCTTTAACCACTGTTGAGTTAAAACCAATTCAAGAAAAATATCATCTATATGATCCATTTTGCTGGCAGACTTTTGGTGAATTAAGAACTCCAACTGTCCCACCAATTGGTTGTTTACAGATTGGGAAACCGTCGAATAATCGAATTCAAACTGATCACGATATATGTTGA 1605 0.3882 MSGFSLRGFTYMLLIAFLIWSSNFECCIARRGKHLRQSRTFSSSLFKKKGKSYNGNSHNKNHHSGGSNSKPKSPPHKSTPPLPKSPPSHKSVPSSPPISKPKYSPSIPPPKANNGVHSTFFNVLDYGAKGDGNTDDTKAFQATWAATCKVEASTMVIPANYIFYVGPISFSGPYCKANIVFQLDGTIIAPTNPNAWSGVTLQWLEFTKLEGITIQGNGVIDGRGSVWWQDFPYDNPIDDEEKLIVPLNQTQKPPMPVQNEMGRKMPSNKPTALRFYGSYGPTVTGITIQNSPQCHLKFDNCNGVLVHDVSISSPGDSPNTDGIHLQNSKDVLIHSSKLACGDDCISIQTGCSNVYVHNVNCGPGHGISIGSLGKDNTRACVSNITVRDVNIHDSMNGVRIKTWQGGSGSVQGVLFSNIQVSEVQLPIVIDQFYCDKRVCTNHTSAVSLAGINYERIKGTYTVKPVHFACSDSLPCVDVSLTTVELKPIQEKYHLYDPFCWQTFGELRTPTVPPIGCLQIGKPSNNRIQTDHDIC* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1397 534 MobiDBLite consensus disorder prediction 46 109 - -
Mtr5g1397 534 PANTHER PECTIN LYASE-LIKE SUPERFAMILY PROTEIN 6 524 - -
Mtr5g1397 534 PANTHER - 6 524 - -
Mtr5g1397 534 MobiDBLite consensus disorder prediction 46 73 - -
Mtr5g1397 534 MobiDBLite consensus disorder prediction 74 108 - -
Mtr5g1397 534 ProSitePatterns Polygalacturonase active site. 358 371 IPR000743 GO:0004650|GO:0005975
Mtr5g1397 534 SUPERFAMILY Pectin lyase-like 118 532 IPR011050 -
Mtr5g1397 534 Gene3D - 110 517 IPR012334 -
Mtr5g1397 534 SMART pbh1 328 349 IPR006626 -
Mtr5g1397 534 SMART pbh1 381 402 IPR006626 -
Mtr5g1397 534 SMART pbh1 301 327 IPR006626 -
Mtr5g1397 534 SMART pbh1 410 431 IPR006626 -
Mtr5g1397 534 SMART pbh1 351 371 IPR006626 -
Mtr5g1397 534 SMART pbh1 209 230 IPR006626 -
Mtr5g1397 534 Pfam Pectate lyase superfamily protein 120 147 IPR024535 -
Mtr5g1397 534 Pfam Glycosyl hydrolases family 28 151 230 IPR000743 GO:0004650|GO:0005975
Mtr5g1397 534 Pfam Glycosyl hydrolases family 28 267 486 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1397 Mtr-Chr5 14646166 14651194 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1397 4 534 Glycoside Hydrolase AT1G60590 65.981 0.0 699
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1397 - - gmx:732602 837.025
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g1397 5 14646166 14651194 Mtr5g1397 5 14646166 14651194 ECH