Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1380 ATGAAGAGAAACAACAGTTTTTCTCAACTCTTTTTTATGTCTTTGTTGGTGCTTATCTTTGTCACATTTTCTGTGGATGCAAGGAACACTAACATAAAGAAAAAACTACACAAACATCACAAAAAATCACATCCTCTTCCTCATTATGATCCTCATCCAATTCAACCAAACACTTTTGATATTATGTCTTTTGGTGCAAAGGGCAATGGAGTTTCTGATGATTCAGAGGCATTTCTAGCTGCATGGAAATGTGCATGCAAAGTTTCTGGTGCAACAATCAAAGTTCCAGAAAAACTCAAATTCCTCATTAAGCCTATTACTTTACAAGGCCCTTGTATGCCTGATCTTACTCTTCAGATAGATGGAACAATATTGGCTCCTCCTGAAGTATCTTCATGGCCAAAGTCCAATTTATTTCAATGGATAAATTTTAAATGGGTGCAGAATTTCACTATCAAAGGCTATGGCACTATTGATGGTCAAGGTTCTAATTGGTGGAGCTCTTCAAAACTTTATGATATACAGAAAACTCACTCTAAACAAATTCCAAGCATGAAGCCAACTGCTATAAGATTTTATTCTAGCAACTTTGTAAAGATTAGAGATATCAAAATCAAAAACAGTCCTCTATGCCATCTAAAATTTGACAACTCAAAGGGAATCAAAGTTGACAATATTACAATATCTTCCCCGGAAAATAGTCCAAACACTGATGGCATTCACTTGCAAAATACACAGGATGTAGAAATTCAACACTCTAATATTGGAACTGGAGATGACTGTGTGTCCATACAAACCGGTTGCTCTAATATTCATGTCCACCACATTAAATGTGGCCCTGGTCATGGCATAAGTCTAGGAGGATTAGGAAAAGACAAGAGTGTGGCATGCGTCTCTGACATCATTGTTGAAGATATTTCAATGAAAAATACTCTATATGGAGCAAGGATCAAAACATGGCAGGGAGGCAATGGTATGGTAAAAAATGTATCATTTTCAAGAATCAAAGTCTATGATGTTATGTATCCAGTAATGATAGACCAATACTATTGTGACAAACAAATCTGCAAGAACCAAACAGGAACAGTGATAATTTCTGGTGTCAAATTTGATCAAATAAGTGGCAGTTATACTCTGCAGCCGGTCCACCTAGCATGCAGCAATTCCATCCCATGCACAGACGTTGATTTAACTGACATTCAGTTAAGACCTTCCCTTAGTTATAGGGGAATGCAACAAGCTATGTGTTGGAACTCTTATGGAAAATCACAAGGTCAATTAGTACCTTCAAGTATTGATTATTGTTTGAGAAGTGGTGGTGGATTAATTAAGAGGATAGCAAAGTCACATGATAGTGTATGTTATAAAATGTTATAG 1377 0.3631 MKRNNSFSQLFFMSLLVLIFVTFSVDARNTNIKKKLHKHHKKSHPLPHYDPHPIQPNTFDIMSFGAKGNGVSDDSEAFLAAWKCACKVSGATIKVPEKLKFLIKPITLQGPCMPDLTLQIDGTILAPPEVSSWPKSNLFQWINFKWVQNFTIKGYGTIDGQGSNWWSSSKLYDIQKTHSKQIPSMKPTAIRFYSSNFVKIRDIKIKNSPLCHLKFDNSKGIKVDNITISSPENSPNTDGIHLQNTQDVEIQHSNIGTGDDCVSIQTGCSNIHVHHIKCGPGHGISLGGLGKDKSVACVSDIIVEDISMKNTLYGARIKTWQGGNGMVKNVSFSRIKVYDVMYPVMIDQYYCDKQICKNQTGTVIISGVKFDQISGSYTLQPVHLACSNSIPCTDVDLTDIQLRPSLSYRGMQQAMCWNSYGKSQGQLVPSSIDYCLRSGGGLIKRIAKSHDSVCYKML* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1380 458 PANTHER - 16 443 - -
Mtr5g1380 458 SMART pbh1 268 288 IPR006626 -
Mtr5g1380 458 SMART pbh1 245 266 IPR006626 -
Mtr5g1380 458 SMART pbh1 218 244 IPR006626 -
Mtr5g1380 458 SMART pbh1 327 348 IPR006626 -
Mtr5g1380 458 SMART pbh1 298 319 IPR006626 -
Mtr5g1380 458 Gene3D - 51 438 IPR012334 -
Mtr5g1380 458 PANTHER PECTIN LYASE-LIKE SUPERFAMILY PROTEIN 16 443 - -
Mtr5g1380 458 SUPERFAMILY Pectin lyase-like 53 432 IPR011050 -
Mtr5g1380 458 Pfam Glycosyl hydrolases family 28 91 405 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1380 Mtr-Chr5 14427851 14431058 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1380 7 454 Glycoside Hydrolase AT3G26610 60.521 0.0 574
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1380 K01213 - gmx:100803027 768.459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g1380 5 14427851 14431058 Mtr5g1380 5 14427851 14431058 ECH