Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1247 ATGTCTGATTCAAATTCACCACGTGGTGAACAAGAACAAGAACAAGAAGAGAATCAAATGAATTCATCTTCAATGATGAGTTCAATTTCTGAAACCCTAGATCCTGCTCAAATGGGTATTTCTTTGGCTGATCTTGAGGATGACATTGACGTTGACGTTGATGTTGTGGGAGTTTCTGAGCCTGAGGATGCGGGGTTAACCAACGCTGAGATTTTTTCCGTAATGTCCACCGGTGATGTTCCGCAGGTAGATATTGGTGATTTGTCAGATATTTGGCCGGGGCCGATGGATCTTGCTGTGTATGCTCCGGTTCCGATTAATTCTACTCGGATTTTGGCTGCGCCGCCCCAAGCTTGGTTACCTCCTGATGATGAGAACTGGATTTATGATTTTAATGAAGAAGCCTTACAGGATGAAGTTTATGATTCTGATTCTAAAGCTGTGCCATTGATGATTGGAGCTGGGCTTGCCAACCTTGGTAACACATGCTTTCTCAATTCAATTATGCAATGCTTCACGCATACCGTGCCCCTAGTTGAGGGTCTTCTTTTGAGCTGCCATTCTCCTAATGATGGTCATAATGGGTTCTGTGTTATCTGTGCTTTCCGCTATCAGATGAAACAGTCCTTGGAGTCTACTGGAAGAGTCATCTCCCCTGTGGTATTTGTGGATAATTTGAAGCAATTTTCTTCTGACTTTAGAAGACATCAGCAAGAGGATGCACATGAGTTTATGCAGTGTGCATTGGATAAACTTGAGACATGTTTTTCAAATTTTGAGGAGGATAATATTGCGAAGAAAGTCTTTGGAGGCAGTCTGGTTAGCAAGCTTCGGTGTTGTAACTGTAGCCGCTCTTCCATCACTAATGAGCCGTTGATTGACCTGAGTCTAGAAATAGAAAATGTAGATTCTATTTCAAGTGCATTGGAGTCTTTCACAATGGTGGAAAACATTGATGCTAAGCTTAAATGTGAGGGCTGCAATGAAGAAGTGTCTGTGGAGAAACAGCTTATGTTGGATCAGACACCTTCAATTGCTGCATTCCATTTAAAGAGGTTTAAGACAGTTGGGAATAATGCAGTTGAAAAGATTGACAAGCATATCAATTTTCCATTGGAGTTGGATTTGCAACCTTACACCATTTTGAATGAAAGCGATAATGCATCATTGAAATATGATCTATATGCAGTTGTTGTGCATAATGGAACTTCATCTGACTCTGGGCATTATTTCTGCTTTGTTCGCACTGCTCCAGACACATGGCATAAGTTGGATGATTCAATGGTAACTAAGGTATCTGAAGGGACTGTGCTGTCTCAGGAAGCATACATATTGTTTTATGCCCGACAAGGCACACCTTGGTTTTCAAGTTTTGCAGAATCTACAATTCCATGCTTGAATCTGAGTAGGATGAACACGTCTCCCAAGTCTGTTTTAGACATCACTGATGGCCAAGATAAATCATTTTCTATTTCAAATGAAAATATTGAAAGGAGTGGGGTCGGTAAATCCAAAAAAAATTCTGAGAAGTCTGATTATTCTTGTCAACAAAGTCGCAAGTTTCCTGAAAATGACGATGTTATTGATGCTTCTCCTTGCCGCAAACAATTTCCTGCTGGGCCATCAAATCAGAAAACTCTTCATTTGAATGGATCGGAAGATATCAGCGCCCAAGTGCTACCTGTGAATTATGCCAGCCCGACTGGCATTGCAAAGCCTGGTGGGAGTTCATATGCTGAGAATGTTGCTCCTGATAAAAGCAAATGCAGTCTGGAAGCTAATGATTTTATAGAGAATGATGTTTTCAATGCCTTAACTCCTCCCAACTCTCCCCCTTCTCAGACTCCAGGTAAGAGTTTCCAGATCTCACGCGATCATTTGAAGAAAGAGAAGCAAGGAATTAGTGGTAAAAGATCATCATCAGGCAAGTCTTCGGATAATCCTCAAAATAAAGCTGCCAGGGCATATGTTAGGAATATGCCTGGTTCAAGGAGAGGTGCATTTTTGGACTTACTTGGCGATTCTCCAGAAAACAAGAGAAAAAAGACTGGTTCATCGCATTCTGACAAAGACAGCAGCAGTGCTCGCAAGAAATCAGGCCATGCTTCTGTCGGAAGCTACCCTGTGGCAGCCGGAGTTTCACAGTGA 2148 0.4185 MSDSNSPRGEQEQEQEENQMNSSSMMSSISETLDPAQMGISLADLEDDIDVDVDVVGVSEPEDAGLTNAEIFSVMSTGDVPQVDIGDLSDIWPGPMDLAVYAPVPINSTRILAAPPQAWLPPDDENWIYDFNEEALQDEVYDSDSKAVPLMIGAGLANLGNTCFLNSIMQCFTHTVPLVEGLLLSCHSPNDGHNGFCVICAFRYQMKQSLESTGRVISPVVFVDNLKQFSSDFRRHQQEDAHEFMQCALDKLETCFSNFEEDNIAKKVFGGSLVSKLRCCNCSRSSITNEPLIDLSLEIENVDSISSALESFTMVENIDAKLKCEGCNEEVSVEKQLMLDQTPSIAAFHLKRFKTVGNNAVEKIDKHINFPLELDLQPYTILNESDNASLKYDLYAVVVHNGTSSDSGHYFCFVRTAPDTWHKLDDSMVTKVSEGTVLSQEAYILFYARQGTPWFSSFAESTIPCLNLSRMNTSPKSVLDITDGQDKSFSISNENIERSGVGKSKKNSEKSDYSCQQSRKFPENDDVIDASPCRKQFPAGPSNQKTLHLNGSEDISAQVLPVNYASPTGIAKPGGSSYAENVAPDKSKCSLEANDFIENDVFNALTPPNSPPSQTPGKSFQISRDHLKKEKQGISGKRSSSGKSSDNPQNKAARAYVRNMPGSRRGAFLDLLGDSPENKRKKTGSSHSDKDSSSARKKSGHASVGSYPVAAGVSQ* 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1247 715 MobiDBLite consensus disorder prediction 499 513 - -
Mtr5g1247 715 MobiDBLite consensus disorder prediction 637 652 - -
Mtr5g1247 715 MobiDBLite consensus disorder prediction 674 697 - -
Mtr5g1247 715 Pfam Ubiquitin carboxyl-terminal hydrolase 155 447 IPR001394 GO:0004843|GO:0016579
Mtr5g1247 715 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 148 477 - -
Mtr5g1247 715 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 392 410 IPR018200 GO:0004843|GO:0006511
Mtr5g1247 715 MobiDBLite consensus disorder prediction 602 715 - -
Mtr5g1247 715 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 148 477 - -
Mtr5g1247 715 MobiDBLite consensus disorder prediction 622 636 - -
Mtr5g1247 715 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 155 170 IPR018200 GO:0004843|GO:0006511
Mtr5g1247 715 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 154 450 IPR028889 -
Mtr5g1247 715 Gene3D Cysteine proteinases 144 451 - -
Mtr5g1247 715 SUPERFAMILY Cysteine proteinases 154 449 IPR038765 -
Mtr5g1247 715 MobiDBLite consensus disorder prediction 1 29 - -
Mtr5g1247 715 MobiDBLite consensus disorder prediction 496 525 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1247 Mtr-Chr5 12799346 12803639 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1247 151 449 Miscellaneous Gene Families AT2G24640 34.494 8.93e-48 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1247 K11855 - gmx:100806936 563.148
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g1247 5 12799346 12803639 Mtr5g1247 5 12799346 12803639 ECH