Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1237 ATGGCAATGAGCAACAACATCATAGGATTCATAAACCTAGTAGCTGTAATCCTCTCAATCCCAATCATTGGTGCTGGAATCTGGCTAACAAACGAACCAGCAGACACATGTGTCAAATTTCTCCAATGGCCAGTCATAATCCTTGGTGTTCTTCTCTTAGTTGTGTCTCTTGCTGGTCTCATTGGTTCCTTTTGGAGAATCTCATGTCTCCTAATATTCTACCTAGTTGCTATGCTTGTGCTTATTATCTTGCTAGTTTGTTTGGTTATTTTTGTTTACATGGTTACTCTTCGTGGTCATGGTATGATTGAACCTAATAGGGCTTATTTGGAATACCGTTTGGATGATTTTTCTGGGTTTTTGAAAAGAAGAGTTAGAAGTTCTTTTAAGTGGGATGCTATTAGAAGTTGTCTTAGTCAAACAAACATGTGTGGTGAGTTGAATCAAAGTTTTCGTATGGCTCAGGACTTCTTTAATGCACGTTTAACACCAATGCAGTCTGGGTGCTGCAAACCACCAACACAATGTGCATACACATTTGTGAACCCAACATATTGGATTAGTCCAATAAACAATGCAGCTGACATGGATTGTCTTCAATGGAGCAACGACCAAACAACACTTTGTTACAACTGTGACTCATGCAAGGCTGGTTTGTTGGCAAATCTTAGGAAGGAATGGAAAAGAGCTAATGTGATATTGATCATCACTGTTGTCGTTTTAATTGTGGTTTATTTGATTGGATGCTTTGCTTTTAGGAATGCCAAAACTGAGGATCTCTTTCGTAAGTACAAACAAGGCTACACTTGA 810 0.3877 MAMSNNIIGFINLVAVILSIPIIGAGIWLTNEPADTCVKFLQWPVIILGVLLLVVSLAGLIGSFWRISCLLIFYLVAMLVLIILLVCLVIFVYMVTLRGHGMIEPNRAYLEYRLDDFSGFLKRRVRSSFKWDAIRSCLSQTNMCGELNQSFRMAQDFFNARLTPMQSGCCKPPTQCAYTFVNPTYWISPINNAADMDCLQWSNDQTTLCYNCDSCKAGLLANLRKEWKRANVILIITVVVLIVVYLIGCFAFRNAKTEDLFRKYKQGYT* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1237 269 ProSitePatterns Transmembrane 4 family signature. 49 71 IPR018503 GO:0016021
Mtr5g1237 269 PANTHER TETRASPANIN/PERIPHERIN-RELATED 1 268 - -
Mtr5g1237 269 PANTHER TETRASPANIN-8-RELATED 1 268 IPR044991 GO:0009734|GO:0016021
Mtr5g1237 269 PRINTS Transmembrane four family signature 6 29 - -
Mtr5g1237 269 PRINTS Transmembrane four family signature 38 64 - -
Mtr5g1237 269 PRINTS Transmembrane four family signature 65 93 - -
Mtr5g1237 269 Pfam Tetraspanin family 6 250 IPR018499 GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1237 Mtr-Chr5 12686776 12689094 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1237 1 269 Miscellaneous Gene Families AT5G46700 67.658 7.50e-130 367
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1237 - - gmx:100795775 457.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g1237 5 12686776 12689094 Mtr5g1237 5 12686776 12689094 ECH
Mtr5g1237 5 12686776 12689094 Mtr8g2052 8 30362580 30365285 PCT