Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1232 ATGGCTAAAAAGAAACAGAATGAACCTCAACAAACCCCTCAAAACGACACCGTTTCAGCCCCCTCCAGCATTTTCAACACGCTCTTCGCTAACGCGCCGGAACAAACCACCGCCGCCGCTGACACCGTTTCTCTATTTTCCGATGACAACCCCTATAAGAGAAAGCCTAATCAAACTCTCAGCCCTGAAAACGGTGTCGTTGATGAAAAGAAGAGGAAGAAGAACAAAGAGAAAAGTCCTGTGATCGATTCAAATCCAATAATTGAAGTTTCAGAGAAGAAGGAGAAGAAGAAAAAGAAGAAAAGTGGTTCCGGCGAAGAGGAAGAGAAAGAAAAAGAGGTTAATTTGGATGGAGAAGGGGTTGGGGATAAGAAGAAGAAGAAGAGAAAGAGGGATGAGGTTGAGAAAGAGTGGGAGGAGAAGAAGTATGGGATTGTTGAAGGAGGAGATAAAGATGAAAGTGTGGAGAAAGTTGGGAATAAGAGAAAAGTGCGTGATAATCCCGCGGATATGATGGTTACAAAAGAAGGTTTTGATGATGAAGATAAGCTTTTGAGGACTATTTTTGTTGGGAATTTACCTGTTAAGGTGAAGAAGAAGACTTTGTTGAAGGAGTTTAAGGTTTTTGGTGAAGTTGAATCTGTTAGGATTCGTTCCGTTCCATTACAAGATACTAAGAAACCTAGAAAGGGAGCAATCCTTGCGAAGAAGATCAGTGAAACGGCTGAAAGCGTCAATGCTTACATCGTTTTCAAAACTGAGGAATCTGCTCAGGCTTCATTGTCCCACAACATGACTGTGGTTGATGGAAATCACATTCGTGTTGATAGGGCATGCCCACCCCGCAAAAAACTTAAAGGGGATAGTGCTCCCCTTTACGATAATAAGAGAACCGTTTTTGTGGGCAATCTCCCATTTGATGTGAAGGATGAAGAACTTTATCAGCTATTTTGTGGTATACCAAGTCTAGAATCAAGTATAGAAGCTATTAGAGTTGTTCGAGATCCTCATCTTAATGTTGGAAAGGGAATTGCCTATGCGCTATTTAAAACAAGGGATGCTGCCCTTTCCGTTGTTAGGAAACGGTCCTTAATGCTCCGAGATCGAGAATTGAGAGTCAGTATTGCAAAAGCAGATCCTAGTGCTACCCCATCTAAAAGGCCCTACTCTCCAGCGGCACGACCCAGTCATGGCAAACCAGATGCTACCCCATCTAAAAAACCATACTCTCAAGCAACACAAGGTCGTAGTACCCCTGTAAAGAAGTTTTCAGGGGCTTCAAAGTCTCCTTCAAGCAGTAAAAACGGGTCAAACAGAAAAACCACTGCTTCTTATCAGGGTCTGCGAGCTACCAAATCTGATGTCCCCAAGAAAAGTCACAGTGGAGAAAAACCAAAAGAGCGCACAAAGAAAAGACCCACAGTAGCTGCCAGAAAGGCTAAAGCAAACATGCAGAAGGAAGGTGATACACCGAAACAAGCAGGGTCAAAACGCAAGTTTGATAGTCGTACTCCTGATAGCTCCCGACGAGTTATGAAAGTCCAAAAGAAGAGGTAG 1557 0.4316 MAKKKQNEPQQTPQNDTVSAPSSIFNTLFANAPEQTTAAADTVSLFSDDNPYKRKPNQTLSPENGVVDEKKRKKNKEKSPVIDSNPIIEVSEKKEKKKKKKSGSGEEEEKEKEVNLDGEGVGDKKKKKRKRDEVEKEWEEKKYGIVEGGDKDESVEKVGNKRKVRDNPADMMVTKEGFDDEDKLLRTIFVGNLPVKVKKKTLLKEFKVFGEVESVRIRSVPLQDTKKPRKGAILAKKISETAESVNAYIVFKTEESAQASLSHNMTVVDGNHIRVDRACPPRKKLKGDSAPLYDNKRTVFVGNLPFDVKDEELYQLFCGIPSLESSIEAIRVVRDPHLNVGKGIAYALFKTRDAALSVVRKRSLMLRDRELRVSIAKADPSATPSKRPYSPAARPSHGKPDATPSKKPYSQATQGRSTPVKKFSGASKSPSSSKNGSNRKTTASYQGLRATKSDVPKKSHSGEKPKERTKKRPTVAARKAKANMQKEGDTPKQAGSKRKFDSRTPDSSRRVMKVQKKR* 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1232 518 MobiDBLite consensus disorder prediction 377 518 - -
Mtr5g1232 518 Gene3D - 286 385 IPR012677 -
Mtr5g1232 518 MobiDBLite consensus disorder prediction 406 449 - -
Mtr5g1232 518 MobiDBLite consensus disorder prediction 1 133 - -
Mtr5g1232 518 SUPERFAMILY RNA-binding domain, RBD 179 286 IPR035979 GO:0003676
Mtr5g1232 518 SMART rrm1_1 298 374 IPR000504 GO:0003723
Mtr5g1232 518 SMART rrm1_1 187 276 IPR000504 GO:0003723
Mtr5g1232 518 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 186 280 IPR000504 GO:0003723
Mtr5g1232 518 MobiDBLite consensus disorder prediction 65 80 - -
Mtr5g1232 518 SUPERFAMILY RNA-binding domain, RBD 292 398 IPR035979 GO:0003676
Mtr5g1232 518 MobiDBLite consensus disorder prediction 482 511 - -
Mtr5g1232 518 Gene3D - 182 285 IPR012677 -
Mtr5g1232 518 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 297 378 IPR000504 GO:0003723
Mtr5g1232 518 CDD RRM1_RBM34 186 276 IPR034220 -
Mtr5g1232 518 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 188 230 IPR000504 GO:0003723
Mtr5g1232 518 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 299 371 IPR000504 GO:0003723
Mtr5g1232 518 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 47 517 - -
Mtr5g1232 518 MobiDBLite consensus disorder prediction 88 133 - -
Mtr5g1232 518 CDD RRM2_RBM34 298 374 IPR034221 -
Mtr5g1232 518 MobiDBLite consensus disorder prediction 1 44 - -
Mtr5g1232 518 MobiDBLite consensus disorder prediction 453 470 - -
Mtr5g1232 518 PANTHER RNA-BINDING PROTEIN 34 47 517 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1232 Mtr-Chr5 12620275 12625952 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1232 K14837 - gmx:100809622 597.816
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g1232 5 12620275 12625952 Mtr5g1232 5 12620275 12625952 ECH