Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1223 ATGGCGGTGAAATGCTTACTCCGCAGAAGACTTCATTTCCACCAAACAACTTTCTTCAGGTTCTATTCACCATCTTCTTCTGCATTAATGTTACAACCTGAAACTGAAACTCCAATTTTCAACACCCCACTTCCCAAAACCACCACAAAACTCCCTCGTTTAGTTTCCAAAGTCTTCAAAACCTTAAATTGGGGTGTTGCAAGAGAAATCAAATTCAAGGGCTGTGTTCAAATTCATGGTTTTGAAAATTCAATCAATTCCTTTAGTATCATCATTCACACTTATGCTTTAGCTGGTATGTCTTGGGAAGTTTTTATTTTGATTAGAGATATTGTTACATTTTATAAGGAAGAGAATCGCGACGCCGGTGAATTGGTTTCGCTTCTGCTTGATGTGGAAAAGTCTAATGTTGTGTTTGATATGCTTATCAAAGTGTTTGCGTCGAATTCTATGCTTGAACATGCTAATTATGTTTTTGTTAGAGCTAAGGATGATGGGATTGAGCTGAATATAATGTCGTGTAATTTCTTGTTGAAGTGTTTGGTTGAGGATAATAGAGTGGATGGTGTGAGACTTTTGTTTGAGGTTTTGATAAAGTTTGGTCCGAGGCCGAATATTCATACATATACAATCATGATGAATTTTTTTTGTAGAGGTGTTGGGTGTAGTGTTGATATTAGACGGGCATCTGAGATTTTAGGGAAGATTTACATGAGTGGGGAAACCCCGAATGTTGTTACATATGGTACTTATATTAAGGGACTTTGTAAAGTTGGTTTATTTGGGGTTGCGTGGAGGTTAATTCAAAACTTGTGCCGTAAAAACCAGCCTCTCAATAACCATTGTTTTAATGCTGTCATATATGGATTGTGTCAAGGAGGTATATTAGATGAAGCTTCAGAAGTTTTTAAAGAAATGAAGAACTCTGGAATATTGCCCGATGTTTATAGTTATAGCATTTTAATCGATGGATTTTGCAGGAAAGGTGATATGGATTCAGCCATAAAGTTTTGGGAAGAGATGACTAGCAATAATTTTTCTCCTTCTGCTTTTAATTATTGCAGTTTAATTAAGGGGTACTACAAATCGAAACAATTCGCTAACGCATTGAAAGAGTTTAGGATCATGCAAAAACTTGGTATGTGGCCAGATACAATCGCTTGCAATCACATTCTTAGTATTTACTGCAGGAAGCCCGACTTCAATAAAGCCTTGGCATTGTCGGAGAAATTTCAAGAAAATGGAGTTCACTTCAACCCATATTCATATAATGAATTCATCCACAGGATTTGCAGAGGAAGTGTTCCAGAAAAGGCACTGCAGCTTTTGCCAGTAATGCTGAAAAGGAATGTACTTCCCGATGTTGTTAATTATAGTACTCTTATATCTTGCTTTGCCAAAAGGTTGAACTCTGAAAAGGCTGTGATGTTATTCATAAAAATGACAAAAGTAGGAATCACTTTCAACGTCAAAACGTATACAATTCTTATTAACCTATTCATCAGTGATTGCAAAATGGATGTGGCATATAGATTATTTAAGGGAATGAAAGAAAGTCGTGTATATCCAGATCAGATAGCGTATACAAGTCTAGTTGCTGGTTTTTGTAATACTGGAGAAATGACTAGGGCACGGGCGTTATTTGATGAAATGTCGCGAGAAGGCTGTTCACCAAATGTAGTTACTTATACTTGTTTCATTAATGAATATTTGAAGTTAAACAAGAACAATCAGGCTCATAAGTTGTATGAGAAAATGAAAGAAAGAGGTGTATATCCAGATCAGATCTTGTATACAATGCTAATTGCTGCCTTTTGTAATACTGGAGAAATGAATAGGGCAGAGGCGTTATTTGATGAAATGAAGCAGGAAGGCCGCTGTACACCGAATGTAGTTATGTATACATGTTTGATTAATTCATATATAAAGTTAAACAAAAGAGATCAGGCTGAGAAGTTGTATGAGGAAATGAGGGCAAAGGGTTTGTCCAGATTATGTAGCTCAGAAGGTTCTGTGTCTGAAAGCTGGTGCAATTCATGGAGTTAG 2046 0.3646 MAVKCLLRRRLHFHQTTFFRFYSPSSSALMLQPETETPIFNTPLPKTTTKLPRLVSKVFKTLNWGVAREIKFKGCVQIHGFENSINSFSIIIHTYALAGMSWEVFILIRDIVTFYKEENRDAGELVSLLLDVEKSNVVFDMLIKVFASNSMLEHANYVFVRAKDDGIELNIMSCNFLLKCLVEDNRVDGVRLLFEVLIKFGPRPNIHTYTIMMNFFCRGVGCSVDIRRASEILGKIYMSGETPNVVTYGTYIKGLCKVGLFGVAWRLIQNLCRKNQPLNNHCFNAVIYGLCQGGILDEASEVFKEMKNSGILPDVYSYSILIDGFCRKGDMDSAIKFWEEMTSNNFSPSAFNYCSLIKGYYKSKQFANALKEFRIMQKLGMWPDTIACNHILSIYCRKPDFNKALALSEKFQENGVHFNPYSYNEFIHRICRGSVPEKALQLLPVMLKRNVLPDVVNYSTLISCFAKRLNSEKAVMLFIKMTKVGITFNVKTYTILINLFISDCKMDVAYRLFKGMKESRVYPDQIAYTSLVAGFCNTGEMTRARALFDEMSREGCSPNVVTYTCFINEYLKLNKNNQAHKLYEKMKERGVYPDQILYTMLIAAFCNTGEMNRAEALFDEMKQEGRCTPNVVMYTCLINSYIKLNKRDQAEKLYEEMRAKGLSRLCSSEGSVSESWCNSWS* 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1223 681 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 594 628 IPR002885 -
Mtr5g1223 681 Pfam PPR repeat 246 273 IPR002885 -
Mtr5g1223 681 Pfam PPR repeat 353 380 IPR002885 -
Mtr5g1223 681 PANTHER (PPR) REPEAT PROTEIN, PUTATIVE-RELATED 3 330 - -
Mtr5g1223 681 PANTHER (PPR) REPEAT PROTEIN, PUTATIVE-RELATED 579 662 - -
Mtr5g1223 681 PANTHER (PPR) REPEAT PROTEIN, PUTATIVE-RELATED 318 591 - -
Mtr5g1223 681 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 524 558 IPR002885 -
Mtr5g1223 681 Gene3D Tetratricopeptide repeat domain 483 553 IPR011990 GO:0005515
Mtr5g1223 681 Gene3D Tetratricopeptide repeat domain 272 342 IPR011990 GO:0005515
Mtr5g1223 681 Gene3D Tetratricopeptide repeat domain 411 482 IPR011990 GO:0005515
Mtr5g1223 681 Gene3D Tetratricopeptide repeat domain 624 664 IPR011990 GO:0005515
Mtr5g1223 681 Gene3D Tetratricopeptide repeat domain 554 623 IPR011990 GO:0005515
Mtr5g1223 681 Gene3D Tetratricopeptide repeat domain 343 410 IPR011990 GO:0005515
Mtr5g1223 681 Gene3D Tetratricopeptide repeat domain 198 271 IPR011990 GO:0005515
Mtr5g1223 681 Gene3D Tetratricopeptide repeat domain 48 197 IPR011990 GO:0005515
Mtr5g1223 681 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 630 664 IPR002885 -
Mtr5g1223 681 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 489 523 IPR002885 -
Mtr5g1223 681 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 314 348 IPR002885 -
Mtr5g1223 681 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 559 593 IPR002885 -
Mtr5g1223 681 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 419 453 IPR002885 -
Mtr5g1223 681 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 279 313 IPR002885 -
Mtr5g1223 681 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 454 488 IPR002885 -
Mtr5g1223 681 SUPERFAMILY HCP-like 313 663 - -
Mtr5g1223 681 TIGRFAM PPR: pentatricopeptide repeat domain 597 630 IPR002885 -
Mtr5g1223 681 TIGRFAM PPR: pentatricopeptide repeat domain 316 349 IPR002885 -
Mtr5g1223 681 TIGRFAM PPR: pentatricopeptide repeat domain 458 489 IPR002885 -
Mtr5g1223 681 TIGRFAM PPR: pentatricopeptide repeat domain 632 663 IPR002885 -
Mtr5g1223 681 TIGRFAM PPR: pentatricopeptide repeat domain 492 524 IPR002885 -
Mtr5g1223 681 TIGRFAM PPR: pentatricopeptide repeat domain 527 560 IPR002885 -
Mtr5g1223 681 TIGRFAM PPR: pentatricopeptide repeat domain 282 315 IPR002885 -
Mtr5g1223 681 TIGRFAM PPR: pentatricopeptide repeat domain 561 594 IPR002885 -
Mtr5g1223 681 Pfam Pentatricopeptide repeat domain 582 641 IPR002885 -
Mtr5g1223 681 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 244 278 IPR002885 -
Mtr5g1223 681 Pfam PPR repeat family 170 218 IPR002885 -
Mtr5g1223 681 Pfam PPR repeat family 279 327 IPR002885 -
Mtr5g1223 681 Pfam PPR repeat family 453 499 IPR002885 -
Mtr5g1223 681 Pfam PPR repeat family 383 432 IPR002885 -
Mtr5g1223 681 Pfam PPR repeat family 523 570 IPR002885 -
Mtr5g1223 681 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3 330 - -
Mtr5g1223 681 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 318 591 - -
Mtr5g1223 681 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 579 662 - -
Mtr5g1223 681 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 349 383 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1223 Mtr-Chr5 12528415 12534588 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1223 369 679 Glycosyltransferase AT1G05670 32.166 1.49e-39 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1223 - - mtr:MTR_5g029690 1090.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g1223 5 12528415 12534588 Mtr5g1223 5 12528415 12534588 ECH