Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1218 ATGTCGATAAAAACCGTTAAAGTCGGCAATGTTTCCTTGGGAGCAACCGAGCGGGACATTCAAGAGTTCTTTTCTTTTTCTGGGGACATTGCATATGTTGAACTACGGAGTCATGATGAACGATCGCAAACTGCTTATGTTACCTTCAAGGATTCACAGGGAGCTGAGACTGCAGTATTGCTATCGGGAGCAACAATAGTCGACCTGTCAGTTAATATAACTCTGGATCCAGATTACCAGCTTCCACCTGAGGCCCTGGTTTCACCCGTAAGTGAAAGCAAAACTCCTGGTGGTGCTGACTCTGCTTTGCGGAAGGCAGAGGATGTAGTCACCAGCATGGCAGCCAAAGGCTTTATCTTAGGCAAAGATGCTGTCAACAAAGCAAAGACTTTTGATGAGAAGCTCCAGTTATCATCGAAAGCCTCAGCAACAGTTGCATCTGTTGACCAAAAACTCGGGCTTAGTGACAAAATAGGTGCTGGTGCTTCAGTTGTGAGTGATAAAGTTCGAGAAGTGGATCAAAAGTTTCTGGTTTCAGAAAAGACAAAATCAGCATTTGCAGCTGCGGAACAGACAGTCAGTACCGCTGGTTCTGCCATAATGAAGAATCGCTATGTACTTACTGGGGCCTCTTGGGTAACGGGTGCTTTTAACAGGGTGTCTAAGGCAGCTGTGGAAGTAGGTCAGAAAACAAAAGAGAAAGTGGAGAATGCAGAACAGCAAGAGAAGCGACAGGTTGAAGATCAGTATGCACAGGTCCTTTCCGAACCCTCAAAAGCAGCAGCAGCAGCAAGTGAGCAGCAGTCTTCCAAGCCTGGTCCTGCTCCTGCTCAGGGTTTGATCCTTTGA 849 0.4664 MSIKTVKVGNVSLGATERDIQEFFSFSGDIAYVELRSHDERSQTAYVTFKDSQGAETAVLLSGATIVDLSVNITLDPDYQLPPEALVSPVSESKTPGGADSALRKAEDVVTSMAAKGFILGKDAVNKAKTFDEKLQLSSKASATVASVDQKLGLSDKIGAGASVVSDKVREVDQKFLVSEKTKSAFAAAEQTVSTAGSAIMKNRYVLTGASWVTGAFNRVSKAAVEVGQKTKEKVENAEQQEKRQVEDQYAQVLSEPSKAAAAASEQQSSKPGPAPAQGLIL* 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1218 282 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 7 66 IPR000504 GO:0003723
Mtr5g1218 282 Gene3D - 2 74 IPR012677 -
Mtr5g1218 282 MobiDBLite consensus disorder prediction 235 282 - -
Mtr5g1218 282 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 4 78 IPR000504 GO:0003723
Mtr5g1218 282 Coils Coil 232 256 - -
Mtr5g1218 282 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 1 262 - -
Mtr5g1218 282 SMART rrm1_1 5 74 IPR000504 GO:0003723
Mtr5g1218 282 PANTHER BINDING PARTNER OF ACD11 1 1 262 - -
Mtr5g1218 282 SUPERFAMILY RNA-binding domain, RBD 3 76 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1218 Mtr-Chr5 12499830 12504269 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1218 - - mtr:MTR_5g029640 521.931
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g1218 5 12499830 12504269 Mtr5g1218 5 12499830 12504269 ECH