Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1203 ATGGGTTCTAGACCATATTTGAAAAAAGGGGGTTCTTTGGTGAGGATTTCTCAATTGAGCAATGATATGGATCAAGAAACTGAGAGTCTTGCTACATACACAGTGCAAGTTCCTATAACACCTGATAACCAACCTATGTCGGCGAAGGATATTACTCTTGAGAGATCAACCTCTAGGAGAGTGGAGGATCAATATGCGTCGAGTTCTATGTTTACAGGCGGTTTTAATCAGGCTACTAGAGCTCAGTTCAAGGATAAGGTGATTGAGTCCGAATCAAGTCATCCTCAGATGGCCGGGACTAAAGGGTCGGCGTGTGAGATGTCGGGGTGTGATGGAAAGGTCATGACTGATGAAAGAGGTTTGGAAATACTTCCTTGTGAGTGTGATTTCAAGATTTGTAGGAATTGTTATAAGGATACTTTGAGGAATGGTGAAGGGGTTTGCCCTGGATGTAACGAGGCTTACAAAGAGCAAGCAATGGAAGAGGCTGCTGCTGCGGTTAATCGACAATCACTACCTTTGCCACCTGGTGCGTCGAAGATGGAGAGGAGGTTGTCGATGATGAAATCGGGGAATTTGATGAGGAGCCAAACTAATGAATTTGATCATGCTCAATGGTTGTCTGAGACTAAAGGGACTTATGGATATGGAAACGCTATGTGGCCTAAAGATCCGGTGAATGGTGCTAGTTCTAGTTCTGGTTCTGATTGGATGGGGGGTGACCCTAATGCTTTCAAAGAAAAGCCGTGGAGGCCGTTGACCCGGAAACTGAATATTCGTGCTGCAATTCTGAGTCCTTATCGGCTCATAATATTAGCTCGGATGGTGATTCTGGTTCTCTTCCTTCACTGGAGGGTAGTAAACCCGAATGACGATGCAATGTGGCTGTGGGGCATGTCCGTAGTTTGTGAAATCTGGTTTGCATTCTCCTGGCTTCTTGACCAGCTCCCTAAGCTCTTTCCGATAAATCGTGTTGCTGATCTCGACGTTTTGAAAGAGAAGTTCGAAACTCCTAGTCCAGCAAATCCAACAGGGAAATCTGATCTCCCGGGAATTGATATGTTTGTGTCAACTGCCGATCCAGAAAAAGAGCCACCCCTTGTTACCGCAAATACCATTCTTTCAATTCTAGCAGTTGATTACCCTGTTGATAAACTCGCATGTTATGTCTCTGACGACGGCGGTTCACTTCTAACTTTTGAGGCCATGGCCGAGGCAGCAAGTTTTGCGGAGTTGTGGGTTCCTTTTTGTCGGAAGCACGACATTGAACCAAGGAACCCGGAATCTTACTTTAGTTTGAAGAGAGATCCCTACAGGAACAAAGTACGTTCGGACTTTGTTAGGGACCGCAGGAAGGTGAAGCGCGAGTATGAGGAATTCAAGGTTCGGATTAATGGCCTTCCTGATTCAATCCGGAGGCGCGCTGATGCTTATAATGTTAGAGAGGAGATCAAAGCTATGAGGCTATGGAGAGAGGCTGCAAATGATGAACCGATGGAGAATTTGAAAATTTCTAAAGCTACATGTATGACCGATGGTACTCACTGGCCTGGGACTTGGACAACTCCTGCACCAGAGCATTCTCGGGGTGATCATTCCAGTATCATACAGGTGATGTTGAAACCTCCAAGTGACGAGCCACTAACCGGCCCAGAATCAGATTCAAATGGCATGAATTTAACCGAAGTTGATATTCGTCTTCCTATGCTAGTCTATGTTTCTCGTGAAAAAAGACCTGGCTATGATCACAATAAGAAAGCGGGGGCCATGAATGCCTTGGTTCGAGCTTCAGCCGTAATGTCTAATGGTCCTTTCATACTTAATCTTGACTGTGACCATTACATATATAACTCTGAGGCAATCAGGGAAGGTATGTGCTATATGATGGACCGCGATGGGGACAAGATCAGCTATGTTCAATTTCCTCAAAGGTTTGAAGGAATCGACCCATCAGATCGGTATGCCAATCATAACACTGTCTTCTTTGATGTCAATATGAGAGCTCTCGATGGTATTCAGGGTCCTGTTTATGTTGGTACTGGATGCTTATTTCGAAGAACTGCACTCTATGGCTTTGATCCTCCCCGAGTTCAAGAAGAGGCCACCGGTTGGTTTGGCAGTAAGAAAAAGAATTCCTCAACAGTTGCCTCAGTCCCTGACGTAGAGGATCAATCTTTGAGGAATGGTGGTAGCATTGATGAAGAAGAATTGAGTAGCGCTCTTATTCCTAAGAAATTCGGCAACTCGACCCTTTTTGTTGACTCAATCAGGGTGGCAGAGTTCCAAGGGAGACCACTTGCTGATCATCCTTCCATCAAAAATGGACGTCAACCTGGTGCTCTAACACTTCCTCGAGATCTTCTTGATGCTGCTACTATCGCTGAGGCAATCAGTGTCATCTCATGCTGGTATGAAGATAAGACCGAATGGGGAGATAGAGTTGGATGGATTTACGGGTCGGTAACCGAGGATGTTGTGACAGGTTATAGAATGCACAATAGAGGATGGAGGTCTGTGTATTGTGTGACCAAGAGGGATGCCTTCCGTGGTACTGCTCCAATCAATTTGACAGACCGGCTTCACCAAGTTCTTCGATGGGCAACTGGCTCGGTCGAAATATTCTTTTCACGGAACAATGCAATCTTGGCTAACTCTAGACTGAAATTTTTGCAAAGGATTGCTTATCTTAATGTTGGAATATATCCATTCACTTCATTCTTCCTCATTGTTTATTGCTTCCTCCCGGCTCTTTCACTCTTCACCGGCCAGTTCATAGTCCAATCCCTTCAAGTCACTTTCTTAATTTACCTCTTGGGAATCACCGTGACACTTATTCTTCTTGCTATTCTTGAGATCAAATGGTCAGGCATCGAACTCGAAGAATGGTGGAGAAACGAGCAATTCTGGTTGATAGGAGGCACAAGTGCACATTTTGCTGCAGTTCTTCAAGGTCTACTCAAAGTTATAGCCGGCATCGAGATCTCATTCACTTTAACATCAAAATCCTCCGGCGATGATGAAAACGACGAGTATGCTGATCTCTACATCATCAAATGGTCCTCCTTGATGATACCACCACTCACAATCATGATGGTTAACTTAATCGCAATTGCAACTGCGGTTAGTAGGACTATATACAGCGATGATCGTCAATGGAGTAGTTTACTCGGAGGCGTATTCTTCAGTTTTTGGGTATTGGCTCATTTATATCCATTTGCAAAAGGGCTTATGGGTAGAAGAGGTAGAACACCAACAATTGTGTTTGTTTGGTCAGCATTAATATCAATCACTATATCACTTCTATGGGTTGCTATTGATCCTCCTTCTGGTAACAATCAAATTGGAGGGTCATTCCAATTTCCTTGA 3366 0.4441 MGSRPYLKKGGSLVRISQLSNDMDQETESLATYTVQVPITPDNQPMSAKDITLERSTSRRVEDQYASSSMFTGGFNQATRAQFKDKVIESESSHPQMAGTKGSACEMSGCDGKVMTDERGLEILPCECDFKICRNCYKDTLRNGEGVCPGCNEAYKEQAMEEAAAAVNRQSLPLPPGASKMERRLSMMKSGNLMRSQTNEFDHAQWLSETKGTYGYGNAMWPKDPVNGASSSSGSDWMGGDPNAFKEKPWRPLTRKLNIRAAILSPYRLIILARMVILVLFLHWRVVNPNDDAMWLWGMSVVCEIWFAFSWLLDQLPKLFPINRVADLDVLKEKFETPSPANPTGKSDLPGIDMFVSTADPEKEPPLVTANTILSILAVDYPVDKLACYVSDDGGSLLTFEAMAEAASFAELWVPFCRKHDIEPRNPESYFSLKRDPYRNKVRSDFVRDRRKVKREYEEFKVRINGLPDSIRRRADAYNVREEIKAMRLWREAANDEPMENLKISKATCMTDGTHWPGTWTTPAPEHSRGDHSSIIQVMLKPPSDEPLTGPESDSNGMNLTEVDIRLPMLVYVSREKRPGYDHNKKAGAMNALVRASAVMSNGPFILNLDCDHYIYNSEAIREGMCYMMDRDGDKISYVQFPQRFEGIDPSDRYANHNTVFFDVNMRALDGIQGPVYVGTGCLFRRTALYGFDPPRVQEEATGWFGSKKKNSSTVASVPDVEDQSLRNGGSIDEEELSSALIPKKFGNSTLFVDSIRVAEFQGRPLADHPSIKNGRQPGALTLPRDLLDAATIAEAISVISCWYEDKTEWGDRVGWIYGSVTEDVVTGYRMHNRGWRSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRNNAILANSRLKFLQRIAYLNVGIYPFTSFFLIVYCFLPALSLFTGQFIVQSLQVTFLIYLLGITVTLILLAILEIKWSGIELEEWWRNEQFWLIGGTSAHFAAVLQGLLKVIAGIEISFTLTSKSSGDDENDEYADLYIIKWSSLMIPPLTIMMVNLIAIATAVSRTIYSDDRQWSSLLGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSALISITISLLWVAIDPPSGNNQIGGSFQFP* 1122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1203 1121 SUPERFAMILY RING/U-box 90 158 - -
Mtr5g1203 1121 Pfam Cellulose synthase 352 1112 IPR005150 GO:0016020|GO:0016760|GO:0030244
Mtr5g1203 1121 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 45 1119 - -
Mtr5g1203 1121 SUPERFAMILY Nucleotide-diphospho-sugar transferases 367 694 IPR029044 -
Mtr5g1203 1121 PANTHER CELLULOSE SYNTHASE-LIKE PROTEIN 45 1119 - -
Mtr5g1203 1121 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 88 170 IPR013083 -
Mtr5g1203 1121 Pfam RING/Ubox like zinc-binding domain 108 156 - -
Mtr5g1203 1121 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 554 706 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1203 Mtr-Chr5 12239354 12244849 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1203 21 1121 Glycosyltransferase AT3G03050 73.741 0.0 1716
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1203 K20924 - gmx:100813900 1862.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g1203 5 12239354 12244849 Mtr5g1203 5 12239354 12244849 ECH