LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mtr5g1170	ATGGATCATAATAGGGGAGATAATTGGAAGGAAGTGGTGAAGAAGATGCTTCCGCCGGGTGCTTCTGTTCCTGATGACGCTTCTAATCTTGACTACTCAACAGCTTCGGAATATTTAGGTCCGCCGGTTTCTTATGAAGTACCGAAAGTTGAGCCTCTAGATGTGAAATTCAGAGGAATTGAACGAATCCCTTTGCCGATGTCACGTATTTCCGGTGTGACGGGATCTCCTAATCATAGTCCAAGGGTCTCGGGAAGTTCAGAATCCGTGGTTTCTGTGTTACTAAACCCGGATCTTTCTTCCGGTTCGCCTTCAGCTTCACCGGCTTCGGTTCATAATCCTTCAAATGTTGCTTCTAAGCCGGTGATTAATGAGGCGAAGAGGATGCCTGTTGTTACTTTTAATACCGTTGAAAGGACTCAGAGGAAAGAGGTGGTGGAGGTTGTGAAGCCGGCGTATCCGGAGTACGTTGGAGTTGTGAAAGAAAAGAAGAAAAAGAAAATAAGAGTTTGTTATAGGTGTGGTAAAGGGAAGTGGGAAACTAAAGAGTCTTGCATCGTTTGTAATGCGAAGTATTGCAGCAGCTGTGTGCTCAGGGCAATGGGATCAATGCCTGAAGGGCGCAAATGTGTAACATGCATCGGCCAGCCTATTGACGAATCAAAGCGTCTGAAATTAGGGAAATATTCTAGGGTGTTATCCCGACTGTTGAGTCCTCTAGAAGTTAAGCAAATTATGAAAGCGGAGAAAGAATGTTCGGCTAATCAGCTTCAGCCAGAGCAGTTGAGTGTCAACGGATTTCTCCTCAAGCCTGATGAGATGGAAGAATTACTTGGATGTCCCTTACCTCCACGCAAGCTGAAGCCTGGTAGATATTGGTACGACAAAGAATCTGGTCTATGGGGAAAGGAAGGGGAAAAACCTGACAGAATCATTAGTTCAAACTTGAATTTCTCTGGCAAACTTAGCACTGATGCTAGTAATGGGAACACTGAAGTTTACATCAATGGTAGAGAGATTACAAAACTCGAATTGAGGGTACTCAGGTTGGCAAACGTGCAGTGTCCACGTGATACTCATTTTTGGGTTTATGATGATGGTCGTTACGAGGAGGAAGGTCAAAAGAATATAAGAGGAAACATTTGGGAGAAGGCATCGACAAGATTTGTTTCTGCCCTCTTCTCTCTACCCTATCCTCATGGACAGCCTCATGGATCAAGAGACGAGGCTAGTAATTATACCACAGTTCCTAAATATCTTGAACAGAAAAAAACTCAGAAGCTTCTTCTTCTTGGAATTCAAGGGTCTGGAACTAGCACTATGTTTAAGCAGGCCAAATTTTTGTACGGGAACAAATTTACTGATCAAGAGCTGGAGGACGTTAAACTGATGATACAAAGTAACATGTACAAATATCTTAGCATTTTACTTGATGGAAGAGAGCGTTTTGAAGAGGAGGTTGTTTCTAGAATGAATGGACAAGGTTCGCCTGCTCACATTATGGAAGCTGGTAGCAATGGTGAAGCTAGTAATACTAGTGAGTGCATCTATTCTCTCAACCCAAGGCTAAAGCATTTTTCTGATTGGCTCCTGGACATTATAGCCACTGGGGATTTAGATGCATTCTTCCCTGCAGCGACACGTGAATATGCACCACTAGTTGAAGAAGTGTGGAAAGATCCAGCGATACAAGAGACCTTCAAAAGAAAAGACGAGCTTCACTTCCTTCCAGATGTTGCGGAGTACTTCTTAAGCCGGGCTGTTGAGATATCTAGCAATGATTATGAACCTTCTGAAAGGGACATACTATATGCAGAAGGGGTTACTCAGGGAAATGGTTTGGCTTTCATGGAATTCTCGCTCGATGATCGTAGCCCAAAGTTTGATGCTTATACAGATAACCTTGATGCTCAGTTGCAACCAATGACCAAGTACCAACTCATAAGGGTGAATGCCAAGGGCATGAGCGAAGGTTGCAAGTGGGTTGAAATGTTTGAAGATGTTAGAGCAGTGGTCTTCTGTGTTTCCCTAAGCGACTACGATCAGTTATCTCTTGCACCAGACAGCAATGGCAGCGGAACACTTCTCCAAAACAAGATGATACAAAGCAAGGAGCTTTTTGAAACAATGGTGAGACACCCTTGTTTCAAAGACACTCCTTTAATACTAGTTCTTAACAAATACGACGTCTTCGAGGAAAAGATGAGAAGGGTATCCCTCAACACTTGTGAATGGTTCAAAGATTTTTCTCCCGTGCGCGCACACGACAACAGCCAGTCATTAGCACATCAAGCTTACTTCTACGTCGCGATGAAATTCAAAGACCTTTATGCATCCATCACAGGAAAGAAACTTTTTGTTGCACAAGTTAGGGCAAGGGAAAGAATAACTGTTGATGAAGCATTCAAGTACATAAAAGAGGTTCTTAAATGGGATGAAGAGAAAGATGAAAATTACTATGGTCCACCTGAGGATTCAATTACAGATATGAGTTCATCTTTTTATATTAGACAAGAGTAA	2520	0.4274	MDHNRGDNWKEVVKKMLPPGASVPDDASNLDYSTASEYLGPPVSYEVPKVEPLDVKFRGIERIPLPMSRISGVTGSPNHSPRVSGSSESVVSVLLNPDLSSGSPSASPASVHNPSNVASKPVINEAKRMPVVTFNTVERTQRKEVVEVVKPAYPEYVGVVKEKKKKKIRVCYRCGKGKWETKESCIVCNAKYCSSCVLRAMGSMPEGRKCVTCIGQPIDESKRLKLGKYSRVLSRLLSPLEVKQIMKAEKECSANQLQPEQLSVNGFLLKPDEMEELLGCPLPPRKLKPGRYWYDKESGLWGKEGEKPDRIISSNLNFSGKLSTDASNGNTEVYINGREITKLELRVLRLANVQCPRDTHFWVYDDGRYEEEGQKNIRGNIWEKASTRFVSALFSLPYPHGQPHGSRDEASNYTTVPKYLEQKKTQKLLLLGIQGSGTSTMFKQAKFLYGNKFTDQELEDVKLMIQSNMYKYLSILLDGRERFEEEVVSRMNGQGSPAHIMEAGSNGEASNTSECIYSLNPRLKHFSDWLLDIIATGDLDAFFPAATREYAPLVEEVWKDPAIQETFKRKDELHFLPDVAEYFLSRAVEISSNDYEPSERDILYAEGVTQGNGLAFMEFSLDDRSPKFDAYTDNLDAQLQPMTKYQLIRVNAKGMSEGCKWVEMFEDVRAVVFCVSLSDYDQLSLAPDSNGSGTLLQNKMIQSKELFETMVRHPCFKDTPLILVLNKYDVFEEKMRRVSLNTCEWFKDFSPVRAHDNSQSLAHQAYFYVAMKFKDLYASITGKKLFVAQVRARERITVDEAFKYIKEVLKWDEEKDENYYGPPEDSITDMSSSFYIRQE*	840

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mtr5g1170	839	ProSiteProfiles	G-alpha domain profile.	424	820	IPR001019	GO:0003924\|GO:0007186\|GO:0019001\|GO:0031683
	Mtr5g1170	839	MobiDBLite	consensus disorder prediction	825	839	-	-
	Mtr5g1170	839	MobiDBLite	consensus disorder prediction	95	120	-	-
	Mtr5g1170	839	MobiDBLite	consensus disorder prediction	819	839	-	-
	Mtr5g1170	839	PANTHER	GTP-BINDING PROTEIN ALPHA SUBUNIT	19	835	IPR001019	GO:0003924\|GO:0007186\|GO:0019001\|GO:0031683
	Mtr5g1170	839	PRINTS	Alpha G protein (transducin) signature	427	442	IPR001019	GO:0003924\|GO:0007186\|GO:0019001\|GO:0031683
	Mtr5g1170	839	PRINTS	Alpha G protein (transducin) signature	595	617	IPR001019	GO:0003924\|GO:0007186\|GO:0019001\|GO:0031683
	Mtr5g1170	839	PRINTS	Alpha G protein (transducin) signature	668	696	IPR001019	GO:0003924\|GO:0007186\|GO:0019001\|GO:0031683
	Mtr5g1170	839	PRINTS	Alpha G protein (transducin) signature	721	730	IPR001019	GO:0003924\|GO:0007186\|GO:0019001\|GO:0031683
	Mtr5g1170	839	SUPERFAMILY	FYVE/PHD zinc finger	153	214	IPR011011	-
	Mtr5g1170	839	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	423	811	IPR027417	-
	Mtr5g1170	839	Pfam	G-protein alpha subunit	422	808	IPR001019	GO:0003924\|GO:0007186\|GO:0019001\|GO:0031683
	Mtr5g1170	839	Gene3D	-	454	606	IPR011025	GO:0007165
	Mtr5g1170	839	CDD	G-alpha	426	812	IPR001019	GO:0003924\|GO:0007186\|GO:0019001\|GO:0031683
	Mtr5g1170	839	SUPERFAMILY	Transducin (alpha subunit), insertion domain	453	605	IPR011025	GO:0007165
	Mtr5g1170	839	SMART	galpha_1	414	790	IPR001019	GO:0003924\|GO:0007186\|GO:0019001\|GO:0031683
	Mtr5g1170	839	Gene3D	-	622	818	IPR027417	-
	Mtr5g1170	839	MobiDBLite	consensus disorder prediction	95	122	-	-
	Mtr5g1170	839	PANTHER	EXTRA-LARGE GUANINE NUCLEOTIDE-BINDING PROTEIN 3	19	835	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mtr5g1170	Mtr-Chr5	11730676	11735416	Dispersed/Transposed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mtr5g1170	-		-	gmx:100794534	1451.8

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Mtr5g1170	5	11730676	11735416	Mtr5g1170	5	11730676	11735416	ECH