Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1044 ATGAGAACATGGGTAGTTTCCCAATTGCAACTAAATCACATAACAAGATTGACCTTTGAAAATCCAGTCTTGCTTCGATTTCGACTTAGAAGGTCATCATCGTCGTTCCATTCATTTTCTTCACAAGAAAACTATCTAAATGGGAACTTCAGCATTGTTCATAGACAAAAGGTTAATTTTCTTCCATGTGATTCTTCCCTGTTATCATGTAGTTGTCGTTGTTTTTGCATTGCCATTAATCTGTTTGATAAAATGCCACAAAGGAATTTTCATGTAAGAGAGGTTCATTTTGATCTTGTTGTTGATTGCATTAAATTGTCCCTCGAAAAACCTAATATTTTCACTGCCACTGTTGTTCATTGTGCTGCCTTGAAGACAGGTGCTTTAGCTTACCTTCCAACTTCAACATCTCTATTCACTCTTTATTCCAAAGCTGGAGACTTTACTTCATCTAGGGTTTTATTTGAACACATTCACAACAGAGATGTGATTGCTTGGAATGCTATTATTTCGGCATCGCTCGAAAACAAATGCTATAGGACAGCAGTGGAGTTCTTTCAGAAAATGATCAAGGACCAAACTAGGTTTGATTCCACCACTCTATTGCTTGTGGTGTCAACTTTGTCACACTTGAAAAACTTTGGTCAAGGAAGGGTAATTCATTGTGTGAGTATAAAATCTGGGATGCTTGTGGATATTAGTTTATGTAATGCTCTTATTAACATGTATGCTAAGTGTGGTGACGTAAACTCTTCTGATTCTGAGTGTCTGTTTGAAGAAATGGAATATAAAGATGTTGTTTCATGGAACTCGATAATGAGAGGATGTCTTTACAACGGTGATCTGGAGAAATCGTTGTGTTACTTCAGAAGGATGAATTTTTCGGAAGAAAGGGCAGATCATGTCAGCCTTTCTTGTGCTATTTCAGCGTGTTCGAGTTTGGGAGAATTGGCTTTTGGAGAATGCATTCATGGTCAAGGAATCAAGCTAGGATACAAGGATAACTCTTTTGTTTCGGTTGCAAACTCCCTCATTTCGTTATATTCACAATGTGAGGCCGTCGATGTTGCCGAGACTGTATTCAGAGAAATGGCATACAAAGATATTGTTTCTTGGAATGCAATGATGGAAGGATATGCTTCAAATGAAAATATTCATGAAGCATTTGATCTTATGGTTGAAATGCAAACTACGGGATGTTTCCAACCTGATATAGTAACATTAACTACCATGCTCCCTCTTTGTGCAGAACTAATGCTTTACAGAGAAGGAAGAACTATCCATGGATATGCAATTAGAAGACATATGGTACCTGATCATCTTCCTTTGAGGAATGGCCTTATAGACATGTATTCGAAGTGCAACGTTGTCGAGAAAGCCGAGCTCTTGTTCCATTCTACTGCACAAATAGACTTGGTGTCTTGGAATGCAATGATATCTGGTTATTCTCAGAACAAGTATTATGAAAAGGCTCAAAATTTATTCAAAGAGCTTCTATGTTGCGGTCAAAATTGCAGCTCATCAACTGTTTTCGCCATTCTATCTTCTTGCAACTCTGCAAATAGTCTCAACTTTGGAAAATCGGTTCACATCTGGCAATTAAAGTCCGGTTTTCTGAACCACACTCTCTTGGTAAATTCTCTCATGCAAATGTATATCAACAGTGGAGACCTAACTTCAGGTTTCTCAATTTTGCAAGAGAATTCTTCTATAGCAGATATTGCTTCATGGAACACTATAATTGTAGGTTGTGTAAGAGGTGACCAATTTCAAGAGGCTTTAGAGACTTTCATGTTAATGAGACAAGGACCTTCTTTCAACTATGACTCCATAACCCTTGTAAATGTTTTGTCAGCCGTTGCAAACATAGAACTACTCAACCAAGGAAAGTCTCTTCACAGCCTTGCACTTAAATCTCCTTTCGGATCAGATACTCGTGTTCAGAACTCATTAATTACCATGTATGACAGATGCAGGGACATCAACAGTGCTAGAAAAGTGTTCAAATTCCATTCTATTTCCAATCTATGCACATGGAACTGCATGATCTCAGCTTTATCTCATAACAAGGAAAGTAGAGAAGCGTTGGAACTATTCCGTCATCTTCAGTTCAAACCAAATGAGTTCACCATTGTTAGTGTTCTCTCCGCATGCACTCGAATTGGTGTTCTAATACACGGAAAACAAGTTCATGGTTACACATTCAGGTATGGATATCAACAAAATTCTTTCATATCAGCAGCTCTTGTAGACTTGTACAGCACCTGTGGAAGACTGGACAATGCTGTCAAAGTATTCAGACATTCGCAGAAGTCAGAATCAGCATGGAATTCAATGATTGCTGCATATGGTAATCATGGAAATGGTGAGAAAGCAATAGAACTATTCCATGAGATGTGTGATTTAGGAATTAAAGTGACCAAAAGCACATTTGTTAGCCTTTTATCTGCATGCAGCCATTCAGGACTTGTGAACCAAGGACTTCAGTACTATGAATGTATGTTGGAGAAATATGGCATAAAACCTGAGGCTGAGCATCAAGTTTATGTGGTTAACATGTTAGCAAGATCAGGTAGAATTGATGAGGCTTATCAGTTTACAAAAGGGTTGCAATCCAATGCAAGTTCAGGTGTATGGGGGATGCTTTTGAGTGTATGCAACTATCATGGAGAACTTGAGTTGGGGAAAAAGGTTGCTGAAAAACTCTTTGAAATGGAACCTCAAAATGTCGGATATTATATATCATTGGCAAATATGTATGTTGCTGCTGGAAGTTGGAAAGATGCTACTGATTTGAGACAATATATACATGACCAAGGATTAAGAAAATGTGCAGGTTATAGTCTTATTGATGTTGGTTTGGGATAG 2868 0.3801 MRTWVVSQLQLNHITRLTFENPVLLRFRLRRSSSSFHSFSSQENYLNGNFSIVHRQKVNFLPCDSSLLSCSCRCFCIAINLFDKMPQRNFHVREVHFDLVVDCIKLSLEKPNIFTATVVHCAALKTGALAYLPTSTSLFTLYSKAGDFTSSRVLFEHIHNRDVIAWNAIISASLENKCYRTAVEFFQKMIKDQTRFDSTTLLLVVSTLSHLKNFGQGRVIHCVSIKSGMLVDISLCNALINMYAKCGDVNSSDSECLFEEMEYKDVVSWNSIMRGCLYNGDLEKSLCYFRRMNFSEERADHVSLSCAISACSSLGELAFGECIHGQGIKLGYKDNSFVSVANSLISLYSQCEAVDVAETVFREMAYKDIVSWNAMMEGYASNENIHEAFDLMVEMQTTGCFQPDIVTLTTMLPLCAELMLYREGRTIHGYAIRRHMVPDHLPLRNGLIDMYSKCNVVEKAELLFHSTAQIDLVSWNAMISGYSQNKYYEKAQNLFKELLCCGQNCSSSTVFAILSSCNSANSLNFGKSVHIWQLKSGFLNHTLLVNSLMQMYINSGDLTSGFSILQENSSIADIASWNTIIVGCVRGDQFQEALETFMLMRQGPSFNYDSITLVNVLSAVANIELLNQGKSLHSLALKSPFGSDTRVQNSLITMYDRCRDINSARKVFKFHSISNLCTWNCMISALSHNKESREALELFRHLQFKPNEFTIVSVLSACTRIGVLIHGKQVHGYTFRYGYQQNSFISAALVDLYSTCGRLDNAVKVFRHSQKSESAWNSMIAAYGNHGNGEKAIELFHEMCDLGIKVTKSTFVSLLSACSHSGLVNQGLQYYECMLEKYGIKPEAEHQVYVVNMLARSGRIDEAYQFTKGLQSNASSGVWGMLLSVCNYHGELELGKKVAEKLFEMEPQNVGYYISLANMYVAAGSWKDATDLRQYIHDQGLRKCAGYSLIDVGLG* 956
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1044 955 SUPERFAMILY TPR-like 164 933 IPR011990 GO:0005515
Mtr5g1044 955 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 573 603 IPR002885 -
Mtr5g1044 955 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 675 705 IPR002885 -
Mtr5g1044 955 Pfam PPR repeat 473 502 IPR002885 -
Mtr5g1044 955 Pfam PPR repeat 576 602 IPR002885 -
Mtr5g1044 955 Pfam PPR repeat 165 192 IPR002885 -
Mtr5g1044 955 Pfam PPR repeat 267 292 IPR002885 -
Mtr5g1044 955 Pfam PPR repeat 342 366 IPR002885 -
Mtr5g1044 955 Pfam PPR repeat 678 702 IPR002885 -
Mtr5g1044 955 Gene3D Tetratricopeptide repeat domain 528 626 IPR011990 GO:0005515
Mtr5g1044 955 Gene3D Tetratricopeptide repeat domain 328 422 IPR011990 GO:0005515
Mtr5g1044 955 Gene3D Tetratricopeptide repeat domain 423 527 IPR011990 GO:0005515
Mtr5g1044 955 Gene3D Tetratricopeptide repeat domain 220 322 IPR011990 GO:0005515
Mtr5g1044 955 Gene3D Tetratricopeptide repeat domain 627 725 IPR011990 GO:0005515
Mtr5g1044 955 TIGRFAM PPR: pentatricopeptide repeat domain 576 601 IPR002885 -
Mtr5g1044 955 TIGRFAM PPR: pentatricopeptide repeat domain 370 404 IPR002885 -
Mtr5g1044 955 TIGRFAM PPR: pentatricopeptide repeat domain 677 703 IPR002885 -
Mtr5g1044 955 TIGRFAM PPR: pentatricopeptide repeat domain 267 292 IPR002885 -
Mtr5g1044 955 TIGRFAM PPR: pentatricopeptide repeat domain 775 807 IPR002885 -
Mtr5g1044 955 TIGRFAM PPR: pentatricopeptide repeat domain 473 502 IPR002885 -
Mtr5g1044 955 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 368 402 IPR002885 -
Mtr5g1044 955 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 471 505 IPR002885 -
Mtr5g1044 955 Pfam PPR repeat family 367 414 IPR002885 -
Mtr5g1044 955 Pfam PPR repeat family 774 819 IPR002885 -
Mtr5g1044 955 Gene3D Tetratricopeptide repeat domain 736 930 IPR011990 GO:0005515
Mtr5g1044 955 Gene3D Tetratricopeptide repeat domain 68 219 IPR011990 GO:0005515
Mtr5g1044 955 PANTHER OS01G0938000 PROTEIN 252 481 - -
Mtr5g1044 955 PANTHER OS01G0938000 PROTEIN 471 951 - -
Mtr5g1044 955 PANTHER OS01G0938000 PROTEIN 432 572 - -
Mtr5g1044 955 PANTHER OS01G0938000 PROTEIN 116 253 - -
Mtr5g1044 955 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 772 806 IPR002885 -
Mtr5g1044 955 PANTHER OS07G0578800 PROTEIN-RELATED 116 253 IPR045215 GO:0003723|GO:0009451
Mtr5g1044 955 PANTHER OS07G0578800 PROTEIN-RELATED 252 481 IPR045215 GO:0003723|GO:0009451
Mtr5g1044 955 PANTHER OS07G0578800 PROTEIN-RELATED 432 572 IPR045215 GO:0003723|GO:0009451
Mtr5g1044 955 PANTHER OS07G0578800 PROTEIN-RELATED 471 951 IPR045215 GO:0003723|GO:0009451
Mtr5g1044 955 Pfam E motif 889 950 IPR046848 -
Mtr5g1044 955 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 265 299 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1044 Mtr-Chr5 10402791 10406249 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1044 277 953 Glycoside Hydrolase AT3G49170 28.571 3.71e-92 310
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1044 - - mtr:MTR_5g025580 1540.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g1044 5 10402791 10406249 Mtr5g1044 5 10402791 10406249 ECH