Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1039 ATGGCACCAGCTAGGGTTTTCGGAGCATTCGCCGGCAGAATGTTAATGGCGGCGGCGAAAGGAGCGACGAAGAAGGCGGCTACATCCGCCGGAGCTGCATCCACAACCGTCGTGAAGAAAACCGCGGTGAAGAAAACGGTTACGAGCAAGAGTACCGGAGGGATACAGAAGGTAGTTCAGGTCACTTCTGAGCTCGGTAATTTCATCGGTGCGCCTGAAGTTTCGCGGACTGAAGCTGTTAAGAAAGTTTGGGAGTATATCAAGCTGCAGAATCTTCAGAATCCTAATAACAAGAAGGAGATCTTTTGTGATGACAAACTGAAGACCATTTTCGATGGGAAAGATAAAGTGGTCTTCACCGAGATTGCCAAATTGCTAGCTACCCATTTCGTGAAATCAACCTGA 405 0.484 MAPARVFGAFAGRMLMAAAKGATKKAATSAGAASTTVVKKTAVKKTVTSKSTGGIQKVVQVTSELGNFIGAPEVSRTEAVKKVWEYIKLQNLQNPNNKKEIFCDDKLKTIFDGKDKVVFTEIAKLLATHFVKST* 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1039 134 SMART swib_2 55 134 IPR019835 -
Mtr5g1039 134 Pfam SWIB/MDM2 domain 59 130 IPR003121 -
Mtr5g1039 134 PANTHER SWIB/MDM2 DOMAIN-CONTAINING PROTEIN-RELATED 3 133 - -
Mtr5g1039 134 SUPERFAMILY SWIB/MDM2 domain 49 132 IPR036885 -
Mtr5g1039 134 Gene3D SWIB/MDM2 domain 48 134 IPR036885 -
Mtr5g1039 134 ProSiteProfiles SWIB/MDM2 domain profile. 54 132 IPR003121 -
Mtr5g1039 134 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 3 133 - -
Mtr5g1039 134 CDD SWIB-MDM2_like 59 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1039 Mtr-Chr5 10377491 10379216 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Mtr5g1039 SWIB 5.6e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1039 - - gmx:100779127 152.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g1039 5 10377491 10379216 Mtr5g1039 5 10377491 10379216 ECH