Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1026 ATGGTTCCCAAACCCATCATCATAATAGCATGTAAACAACCACCCACAACTTATATCCCTCAATTTAACACAGCATCCGTCAGAACCAAAGAAAAACCTCAAACATCACAACCTAAGACACTAAGAACCACCCCTACAAAAACTCTTCTTGCTCTTCTCACCACCACCACCCAAAAACTCAAAAACACAAACAAAACACTACAAACATCATCAATCTCAGCACTAATACTCAACACACTCGATGACATCATCAACACCTTCATAGACCCACCAATAAAACCATCCGTAGATCCAAGACATGTTTTGTCCCAAAACTTTGCACCAGTCCTTGACGAACTCCCTCCAACACAATGCAAAGTCATTAAAGGCACACTTCCACCGTCACTTAACGGTGTTTACATAAGAAACGGACCAAACCCTCAGTTCCTTCCACGTGGACCTTACCATCTCTTTGACGGTGACGGCATGCTTCATGCTGTTAAAATCACAAACGGAAAAGCCACACTATGTAGCCGTTACGTTCAAACCTATAAATACAAAATCGAAAACGAAGCTGGTTACCAAATTCTCCCAAACGTGTTTTCTGGTTTCAACTCGCTTATTGGTTTAGCGGCACGTGGATCCGTGGCTGTAGCACGTGTGTTAACTGGTCAGTATAATCCAATTAACGGCATTGGATTGATCAACACAAGTTTGGCTCTGTTTGGCAACCGTCTTTTTGCTTTAGGAGAATCAGATCTTCCTTATGAAATCAAAGTTACACCAAACGGTGATATCCAAACAATAGGCCGTTATGATTTTAACGGCAAACTCTTCATGAATATGACGGCGCATCCTAAAATTGACTCCGACACAGGTGAATGTTTCGCTTACCGCTACGGTCTCATTCGACCTTTTTTAACCTATTTCCGTTTTGATTCAAATGGAGTTAAACACAATGACGTTCCAGTTTTCTCCATGAAAAGACCTTCTTTTCTTCATGATTTCGCAATTACAAAAAAATACGCTTTGTTCGCTGATATACAGCTTGAAATTAATCCTCTTGACATGATTTTCGGTGGTTCCCCGGTAAGGTCCGATCCATCGAAAGTTCCAAGGATCGGAATTCTACCTCGTTATGCTGATAACGAGTCGAAGATGAAGTGGTTTGATGTTCCTGGGCTTAATATTATGCATTTGATAAACGCATGGGATGAGGAAGATGGGAAAACAGTGACAATAGTTGCACCGAATATTCTCTGCGTGGAGCATATGATGGAGAGATTGGAGCTTATTCATGAAATGATTGAGAAAGTGAGAATTAACGTCGAAACGGGGATAGTAACAAGACAACCGTTATCAGCAAGAAATCTTGATTTGGCAGTGATAAACAATGAGTTTTTGGGGAAGAAACACAGGTTTATTTACGCGGCGATTGGGAATCCAATGCCGAAGTTTTCGGGGGTGGTGAAGATAGATGTGTTGAAAGGGGAGGAAGTTGGGTGTAGGTTGTATGGAGAGGATTGTTATGGTGGTGAGCCGTTTTTCGTGGCTAGGGAAGATGGTGAGGAAGAGGATGATGGTTATTTAGTGAGTTATGTGCATGATGAGAAGAAGGGAGAGTCAAGGTTTTTGGTGATGGATGCTAAGTCTCCGGAGTTTGAGATTGTGGCGGAAGTGAAGTTGCCAAGGAGGGTGCCTTATGGTTTTCATGGATTGTTTGTGAAAGAGAGTGACATCACGAGGTTGTCGGTCTCCTAG 1740 0.4218 MVPKPIIIIACKQPPTTYIPQFNTASVRTKEKPQTSQPKTLRTTPTKTLLALLTTTTQKLKNTNKTLQTSSISALILNTLDDIINTFIDPPIKPSVDPRHVLSQNFAPVLDELPPTQCKVIKGTLPPSLNGVYIRNGPNPQFLPRGPYHLFDGDGMLHAVKITNGKATLCSRYVQTYKYKIENEAGYQILPNVFSGFNSLIGLAARGSVAVARVLTGQYNPINGIGLINTSLALFGNRLFALGESDLPYEIKVTPNGDIQTIGRYDFNGKLFMNMTAHPKIDSDTGECFAYRYGLIRPFLTYFRFDSNGVKHNDVPVFSMKRPSFLHDFAITKKYALFADIQLEINPLDMIFGGSPVRSDPSKVPRIGILPRYADNESKMKWFDVPGLNIMHLINAWDEEDGKTVTIVAPNILCVEHMMERLELIHEMIEKVRINVETGIVTRQPLSARNLDLAVINNEFLGKKHRFIYAAIGNPMPKFSGVVKIDVLKGEEVGCRLYGEDCYGGEPFFVAREDGEEEDDGYLVSYVHDEKKGESRFLVMDAKSPEFEIVAEVKLPRRVPYGFHGLFVKESDITRLSVS* 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1026 579 PANTHER CAROTENOID CLEAVAGE DIOXYGENASE 4, CHLOROPLASTIC-RELATED 21 574 - -
Mtr5g1026 579 Pfam Retinal pigment epithelial membrane protein 106 569 IPR004294 GO:0016702
Mtr5g1026 579 PANTHER BETA-CAROTENE DIOXYGENASE 21 574 IPR004294 GO:0016702
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1026 Mtr-Chr5 10258481 10260440 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1026 K09840 - gmx:100777875 828.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g1026 5 10258481 10260440 Mtr5g1026 5 10258481 10260440 ECH