Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1024 ATGGAAGCTATCGTTGCTCCACCACCGCCGGCACCACCCACCCGCCGCCGCAACGCAGACACCACTTCAACAACCTCTCCTCCTTCCAACCACCAACCTCACCTTCTTCGTTTACCCCTCCGTCGTAACCCCAAACCCAAAAACCTCTCTCTCATTCACCCTTCTTCACAACCTATTACTCCTCCAAAGAAGAGCAAGCGAAGAAGAAAATGTGATACAACTTCACACATCTTACCCTTAATGGATGCTCTTCACTTTCCCATAACCATTGATATTTACACCTCATTGGTCAAAGAATGTACTCTTTCCACCGACCCAGAAACTGCTATTGAGTTGCATACACAAATCATAACTAGAGGCATCGAACTGCCATTGACATTGCTCAATCGGATTCTGATTATGTTTGTTTCATGCGGTTTATTGGAGAATGCACGCCGAGTGTTTGATGTAATGTCTGTGAGGGATTTTCATTCTTGGGCTACCTTGTTTGTTTCTTATTATGAAAATGGTGAGTATGAGAATGCTATAGATGTTTTTGTTAGTATGTTATGTCAATTGGATGTGATGGGGTTTTCTTTTCCTCCGTGGATTTGGTCTTGTCTTCTCAAGGCTTGTGCTTGTACTATGAATGTACCTCTAGGAATGCAAGTTCATGGATGTTTATTGAAGTTGGGTGCTTGCGACCATGTGCTTATTAGTAGCTCTTTGATTAGATTTTACGGGAGGTTCAAGTGTTTGGAAGATGCAAACATGGTTTTTAATCGAGTGTCGCGGCATAACACATTGACTTGGACTGCGAAAATTGTCAGCAGTTGCAGGGAAAGGCATTTCTCTGAGGCTCTTGGTGATTTCAAGAAGATGGGAAGGGTAGGGGTAAAGAAGGACAGTTTTACGTTTTCTAGTGTTCTCAAGGCTTGTGGAAGGATGCAGAATCGTGGAAGCTGCGGTGAACAGGTTCATGCGGATGCAATTAAACTTGGATTGGACTCGGATAGTTACGTGCAGTGTAGTTTGATAGCCATGTATGGAAGAAGTGGATTACTAAGAGATGCAGAACTGGTATTTGAAATGACACGAAATGAAAGAAATGTCGATAGTTTGAATGCGATGCTTATGGGTTACATACAAAATGGTTTGTATATTGAAGCTGTTAAGTTTGTGTATCAGATGAAGGCGGCTGGAGTGCAGCCACATGAACCACTGCTTGAAAAACTAAGAATTGCTTGTGGCAGTTCTAACTTTTCAAGCATGAACTAA 1257 0.4256 MEAIVAPPPPAPPTRRRNADTTSTTSPPSNHQPHLLRLPLRRNPKPKNLSLIHPSSQPITPPKKSKRRRKCDTTSHILPLMDALHFPITIDIYTSLVKECTLSTDPETAIELHTQIITRGIELPLTLLNRILIMFVSCGLLENARRVFDVMSVRDFHSWATLFVSYYENGEYENAIDVFVSMLCQLDVMGFSFPPWIWSCLLKACACTMNVPLGMQVHGCLLKLGACDHVLISSSLIRFYGRFKCLEDANMVFNRVSRHNTLTWTAKIVSSCRERHFSEALGDFKKMGRVGVKKDSFTFSSVLKACGRMQNRGSCGEQVHADAIKLGLDSDSYVQCSLIAMYGRSGLLRDAELVFEMTRNERNVDSLNAMLMGYIQNGLYIEAVKFVYQMKAAGVQPHEPLLEKLRIACGSSNFSSMN* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1024 418 MobiDBLite consensus disorder prediction 1 72 - -
Mtr5g1024 418 Gene3D Tetratricopeptide repeat domain 65 210 IPR011990 GO:0005515
Mtr5g1024 418 Gene3D Tetratricopeptide repeat domain 263 417 IPR011990 GO:0005515
Mtr5g1024 418 PANTHER OS07G0578800 PROTEIN-RELATED 62 412 IPR045215 GO:0003723|GO:0009451
Mtr5g1024 418 MobiDBLite consensus disorder prediction 16 32 - -
Mtr5g1024 418 Pfam PPR repeat 337 357 IPR002885 -
Mtr5g1024 418 Pfam PPR repeat 158 183 IPR002885 -
Mtr5g1024 418 Pfam PPR repeat 366 395 IPR002885 -
Mtr5g1024 418 MobiDBLite consensus disorder prediction 1 15 - -
Mtr5g1024 418 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 363 397 IPR002885 -
Mtr5g1024 418 TIGRFAM PPR: pentatricopeptide repeat domain 366 397 IPR002885 -
Mtr5g1024 418 PANTHER PPR REPEAT PROTEIN 62 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1024 Mtr-Chr5 10243822 10245445 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1024 287 414 Glycoside Hydrolase AT3G49170 36.641 4.46e-14 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1024 - K08726 gmx:100778405 540.036
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g1024 5 10243822 10245445 Mtr5g1024 5 10243822 10245445 ECH