Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0974 ATGCCTAACAGAAATGTTGTCACTTGGACAACCTTAATTTCATCACATCTCAAATATGGGTCTGTTTCAAAAGCCTTTGAGATGTTCAATCACATGCGTGTGTCGGATGAGAGACCAAATGAGAACACTTTCGCTGTTTTGCTTCGAGCATGTACCAACCGTGAACTTTGGAGTGTTGGTTTGCAGATTCATGGCTTGCTTGTTCGGTGTGGGCTTGAGAGAGAAAAATTTGCTGGGAGTTCTCTTGTGTATATGTACTTGAAAGGTGGCGATGATTTGAGGGATGCGTTACGTGTTTTTTATGGATTGTTGGAGAGAGATGTTGTTGCTTGGAATGTTATGATTTCTGGGTTTGCTCAAAATGGTGATTTTCGCATGGTGCAAAGGTTGTTTTCTGAAATGTGGGAAGAGCAAGGGTTGAAACCTGATAGAATCACCTTTGCTAGTTTACTCAAGTGTTGTTCTGTGTTGAACGAGGTAATGCAAATTCATGGGATTGTGTATAAGTTTGGTGCTGAAGTTGATGTTGTGGTTGAGAGTGCTATGGTTGACTTGTATGCCAAATGTAGAGATGTGAGTTCCTGCAGGAAGATTTTTGATTCCATGGAGAAGAAGGATAATTTTGTTTGGAGTTCAATGATTTCGGGCTATACCATGAATAATAGAGGAGAGGAAGCTGTGAACTTTTTCAAGGATATGTGCAGACAAAGGGTGAAACTGGATCAGCATGTGTTATCTAGTACTTTGAAAGCTTGTGTTGAAATAGAGGACTTGAATACTGGTGTTCAAGTACATGGCTTAATGATAAAAAACGGGCATCAGAATGATTGTTTTGTAGCAAGTGTGTTGTTGAATCTCTATGCTAGTTTTGGTGAACTAGGAGATGTGGAAAAGTTGTTTAGCAGGATTGATGATAAAGATATTGTAGCATGGAACTCTATGATCTTGGCTCAAGCTCGGCCAGGTCAGGGATGTGGTCGTTGCATGCAACTATTTCAAGAGCTTCGACGGACAACCTTTTTGCAAATTCAAGGTGCCACTCTGGTTGCTGTTTTGAAGTCTTGTGAGAAAGACTCAGATTTACCTGCAGGTAGACAAATTCATTCACTTATAGTGAAATCAAGTTTGTGTCGTCATACTTTGGTTGGCAATGCGTTAGTCCACATGTACTCTGAGTGTAAACAAATTGATGATGCATTTAAAGCTTTTGTTGACATTGTAAGGAAAGATGACAGTTCATGGAGTTCGATTATTGGAACTTGCAAACAAAACAGGATGGAATCCAAAGCTTTAGAGCTATGCAAAGAGATGTTAGATGAAGGAATCAATTTTACAAGTTATAGCCTTCCACTGTGTATTTCAGCCTGCTCACAACTTTTAACTATAAGTGAGGGTAAACAGCTCCATGTTTTTGCCATCAAGTCCGGTTACAGCTGCGATGTCTACATTGGGAGTTCCATTATAGATATGTATGCTAAATGCGGGAACATAGAGGAGTCAGAGAAAGTTTTCGACGAACAATTAAAGCCAAATGAAGTAACTTTCAATGCCATAATCTCTGGATATGCACATCATGGAAAAGCACAACAAGCCATAGAAGTATTAAGTAAGTTAGAGAAGAATGGTGTGGCCCCCAATCATGTCACTTTCTTAGCTTTGATGTCAGCCTGTAGCCATGCAGGGTATGTAGAAGAAACTTCGCATTTGTTTACATTGATGCTTGACAAATACAAGATTAAGCCAAAATCGGAGCATTATTCGTGCTTGGTTGATGCCTATGGTCGTGCGGGAAGGCTAGAAGAAGCTTACCAGATAGTGCAAAAGGATGGAAGTGAATCAGCTTGGAGAACGTTACTTAGTGCTTGTAGGAATCATAGTAACAGAAAAATTGGAGAAAAATCTGCCATGAAGATGATAGAATTGAATCCTAGTGATCATGCTCCTTATATTCTTCTTTCGAACATTTACATTGAAGAGGGAAATTGGGAAGAAGCTCTTAATTGTAGGAAGAAAATGGCTAAGATTCGTGTGAAGAAAGATCCAGGAAATAGTTGGTTGATTTGA 2064 0.3949 MPNRNVVTWTTLISSHLKYGSVSKAFEMFNHMRVSDERPNENTFAVLLRACTNRELWSVGLQIHGLLVRCGLEREKFAGSSLVYMYLKGGDDLRDALRVFYGLLERDVVAWNVMISGFAQNGDFRMVQRLFSEMWEEQGLKPDRITFASLLKCCSVLNEVMQIHGIVYKFGAEVDVVVESAMVDLYAKCRDVSSCRKIFDSMEKKDNFVWSSMISGYTMNNRGEEAVNFFKDMCRQRVKLDQHVLSSTLKACVEIEDLNTGVQVHGLMIKNGHQNDCFVASVLLNLYASFGELGDVEKLFSRIDDKDIVAWNSMILAQARPGQGCGRCMQLFQELRRTTFLQIQGATLVAVLKSCEKDSDLPAGRQIHSLIVKSSLCRHTLVGNALVHMYSECKQIDDAFKAFVDIVRKDDSSWSSIIGTCKQNRMESKALELCKEMLDEGINFTSYSLPLCISACSQLLTISEGKQLHVFAIKSGYSCDVYIGSSIIDMYAKCGNIEESEKVFDEQLKPNEVTFNAIISGYAHHGKAQQAIEVLSKLEKNGVAPNHVTFLALMSACSHAGYVEETSHLFTLMLDKYKIKPKSEHYSCLVDAYGRAGRLEEAYQIVQKDGSESAWRTLLSACRNHSNRKIGEKSAMKMIELNPSDHAPYILLSNIYIEEGNWEEALNCRKKMAKIRVKKDPGNSWLI* 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0974 687 TIGRFAM PPR: pentatricopeptide repeat domain 7 41 IPR002885 -
Mtr5g0974 687 TIGRFAM PPR: pentatricopeptide repeat domain 586 607 IPR002885 -
Mtr5g0974 687 TIGRFAM PPR: pentatricopeptide repeat domain 513 546 IPR002885 -
Mtr5g0974 687 TIGRFAM PPR: pentatricopeptide repeat domain 413 443 IPR002885 -
Mtr5g0974 687 TIGRFAM PPR: pentatricopeptide repeat domain 209 241 IPR002885 -
Mtr5g0974 687 TIGRFAM PPR: pentatricopeptide repeat domain 109 143 IPR002885 -
Mtr5g0974 687 PANTHER - 325 444 - -
Mtr5g0974 687 PANTHER - 1 320 - -
Mtr5g0974 687 PANTHER - 427 686 - -
Mtr5g0974 687 SUPERFAMILY TPR-like 384 675 IPR011990 GO:0005515
Mtr5g0974 687 Pfam PPR repeat family 4 51 IPR002885 -
Mtr5g0974 687 Pfam PPR repeat family 106 154 IPR002885 -
Mtr5g0974 687 Pfam PPR repeat family 510 558 IPR002885 -
Mtr5g0974 687 Gene3D Tetratricopeptide repeat domain 259 336 IPR011990 GO:0005515
Mtr5g0974 687 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 206 240 IPR002885 -
Mtr5g0974 687 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 410 444 IPR002885 -
Mtr5g0974 687 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 5 39 IPR002885 -
Mtr5g0974 687 PANTHER BNACNNG15330D PROTEIN 325 444 - -
Mtr5g0974 687 PANTHER BNACNNG15330D PROTEIN 427 686 - -
Mtr5g0974 687 PANTHER BNACNNG15330D PROTEIN 1 320 - -
Mtr5g0974 687 Pfam E motif 625 686 IPR046848 -
Mtr5g0974 687 Gene3D Tetratricopeptide repeat domain 1 55 IPR011990 GO:0005515
Mtr5g0974 687 Gene3D Tetratricopeptide repeat domain 337 464 IPR011990 GO:0005515
Mtr5g0974 687 Gene3D Tetratricopeptide repeat domain 56 161 IPR011990 GO:0005515
Mtr5g0974 687 Gene3D Tetratricopeptide repeat domain 162 258 IPR011990 GO:0005515
Mtr5g0974 687 Gene3D Tetratricopeptide repeat domain 557 682 IPR011990 GO:0005515
Mtr5g0974 687 Gene3D Tetratricopeptide repeat domain 465 556 IPR011990 GO:0005515
Mtr5g0974 687 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 511 545 IPR002885 -
Mtr5g0974 687 Pfam PPR repeat 413 442 IPR002885 -
Mtr5g0974 687 Pfam PPR repeat 585 607 IPR002885 -
Mtr5g0974 687 Pfam PPR repeat 209 236 IPR002885 -
Mtr5g0974 687 Pfam PPR repeat 180 205 IPR002885 -
Mtr5g0974 687 Pfam PPR repeat 485 506 IPR002885 -
Mtr5g0974 687 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 107 142 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0974 Mtr-Chr5 9674686 9676749 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0974 12 686 Glycoside Hydrolase AT3G49170 30.870 9.75e-115 363
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0974 - - lja:Lj2g3v1643290.1 1120.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0974 5 9674686 9676749 Mtr5g0974 5 9674686 9676749 ECH