Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0900 ATGATGATCGACGGAACCGAAGATGAAGAGAAGTTCCTCGCCGCCGGAATCGCCGGTCTTCAACAGAACTCCTTCTACATGCACCGTGCATTGGATTCGAATAATCTCAGAGATGCTTTGAAATATTCTGCTCAGATGCTTTCTGAACTTCGTACTTCCAAGCTTTCTCCTCACAAATACTACGAACTCTATATGCGCGCATTTGATCAATTGAGGAAGCTGGAGATGTTCTTCGAGGAAGAGACTCGTCGTGGATGCTCCATTATTGATCTTTACGAGCTTGTCCAGCATGCCGGCAACATTTTGCCGCGATTGTATCTCCTCTGTACAGTAGGATCTGTATACATCAAATCGAAGGAAGCTCCTGCTAAGGATGTTCTTAAGGATCTTGTAGAGATGTGTCGTGGCATTCAGAATCCTGTTCGTGGACTCTTTCTCAGAAGCTATCTTTCTCAAGTTAGCAAGGATAAATTGCCGGATATTGGTTCTGAGTACGAGGGGGATGCAGATACTGTATCAGATGCTGTAGAGTTTGTACTCCAAAATTTCACAGAAATGAACAAGCTTTGGGTGCGGATGCAGCATCAGGGGCCTTCCCGGGAGAAGGAGAAACGAGAAAAGGAGAGGAACGAGCTGCGAGATCTTGTTGGGAAGAATCTTCATGTTCTCAGTCAGATAGAGGGTGTTGACCTTGAGATGTACAAAGATGTTGTGCTTCCTAGAGTACTTGAGCAGGTCGTGAATTGCAAAGATGAGTTGGCCCAATTCTACTTGATGGATTGCATAATTCAAGTCTTCCCTGATGAGTACCATTTGCAAACTCTTGATGTGCTGTTGGGCGCTTACCCTCAACTTCAGTCATCTGTTGACATCAAGACAGTACTATCCCAGTTAATGGAAAGGCTTTCAAATTATGCTGCTTCAAGTGCAGAGGTTTTGCCCGAGTTTTTGCAGGTGGAAGCATTTTCCAAATTAAGCAATGCAATTGGCAAGGTCATAGAGGCACAGCCTGACATGCCCACCGCTGGCGTTGTAACTTTATATTCATCTCTTCTTACCTTCACTCTTCATGTCCACCCTGATCGACTAGATTATGCTGATCAAGTCTTGGGAGCATGTGTGAAAAATCTCTCTGGCAAAGGTAAAATTGAGGACAAGAAGGCAACTAAGCAGATTGTTGCTTTATTAAGTGCTCCACTAGAGAAATATAATGACATTATGACTGCCCTGAAGCTTTCAAACTACCCTCATGTAATGGAATTCCTTGACGTTCCAACTAACAAGGTCATGGCAACTGTTATTATTCAAAGCATTATGAAAAATGGAACACGCATTTCTACCTCTGACAAGGTTGAATCATTGTTTGAACTGATAAAGGGGCTTATCAAGGATTCTGACGGGACTCCTGATGATGAGTTGGATGAAGATGATTTCAAAGAGGAGCAGAATTCTGTTGCACGTCTGATCCAAATGTTTTATAATGATGATCCAGAAGAGATGTTGAAGATAATTGAAACTGTGAGGAAGCACATACTGACTGGAGGACCAAAGCGTCTGCCTTTCACTGTTCCACCTCTTATGTTTTCTTCTTTAAAGTTGGTCAGGCAGTTGCAAGGTCAAAGTCAAAGTCAAGAAGAAAATCCTTTTGGAGATGATGCATCAACATCACCAAAGAAAATCTTTCAGCTTTTAAATCAGACCATCGAGACTCTGTCCGGTGTCCTGGCACCAGAGTTAGCATTGCAGTTGTGCTTGCAATGTGCTGAGGCTGCAAATGACTGTGAGTTGGAACCAGTTGCATATGAATTTTTTACGCAAGCTTATATTCTATACGAAGAAGAAATTTCTGATTCCAGAGCACAGGTCACAGCTATTCATTTAATAATAGGAACTCTTCAAAGGATGCATGTCTTCGGTGTTGAGAACAGGGATACTTTAACTCACAAGGCCACAGGGTATTCAGCAAAGCTTTTAAAGAAGCCAGATCAATGCAGAGCTGTGTATGCATGCTCACATTTGTTTTGGGTTGATGATCATGATAACATGAAAGATGGAGAGAGAGTCCTATTATGCCTTAAGCGGGCTTTAAGGATTGCAAATGCTGCACAACAAATGGCAAATGCAGCACGAGGTAGCACCGGATCAGTAATGCTCTTCATTGAGATTTTGAACAAGTATCTTTACTTCTTTGAGAAGGGAAACCCACAAGTTACAGTTGCTGCTATCCAGGGCCTAATTGAGTTAATTATGAATGAAATGCAAAGTGACACTGCAACTCCAGATCCATCGGCAGATGCTTTCTTAGCCACTACTATGCGCTATATACAGTTCCAAAAACAAAAGGGTGGTACAGTTGGTGAGAAATATGAACCGATCAAGGTTTGA 2385 0.4243 MMIDGTEDEEKFLAAGIAGLQQNSFYMHRALDSNNLRDALKYSAQMLSELRTSKLSPHKYYELYMRAFDQLRKLEMFFEEETRRGCSIIDLYELVQHAGNILPRLYLLCTVGSVYIKSKEAPAKDVLKDLVEMCRGIQNPVRGLFLRSYLSQVSKDKLPDIGSEYEGDADTVSDAVEFVLQNFTEMNKLWVRMQHQGPSREKEKREKERNELRDLVGKNLHVLSQIEGVDLEMYKDVVLPRVLEQVVNCKDELAQFYLMDCIIQVFPDEYHLQTLDVLLGAYPQLQSSVDIKTVLSQLMERLSNYAASSAEVLPEFLQVEAFSKLSNAIGKVIEAQPDMPTAGVVTLYSSLLTFTLHVHPDRLDYADQVLGACVKNLSGKGKIEDKKATKQIVALLSAPLEKYNDIMTALKLSNYPHVMEFLDVPTNKVMATVIIQSIMKNGTRISTSDKVESLFELIKGLIKDSDGTPDDELDEDDFKEEQNSVARLIQMFYNDDPEEMLKIIETVRKHILTGGPKRLPFTVPPLMFSSLKLVRQLQGQSQSQEENPFGDDASTSPKKIFQLLNQTIETLSGVLAPELALQLCLQCAEAANDCELEPVAYEFFTQAYILYEEEISDSRAQVTAIHLIIGTLQRMHVFGVENRDTLTHKATGYSAKLLKKPDQCRAVYACSHLFWVDDHDNMKDGERVLLCLKRALRIANAAQQMANAARGSTGSVMLFIEILNKYLYFFEKGNPQVTVAAIQGLIELIMNEMQSDTATPDPSADAFLATTMRYIQFQKQKGGTVGEKYEPIKV* 795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0900 794 Pfam Vacuolar protein sorting-associated protein 35 13 751 IPR005378 GO:0015031|GO:0030906|GO:0042147
Mtr5g0900 794 Gene3D - 465 779 IPR042491 -
Mtr5g0900 794 PIRSF Retromer_Vps35 313 794 IPR005378 GO:0015031|GO:0030906|GO:0042147
Mtr5g0900 794 PIRSF Retromer_Vps35 2 324 IPR005378 GO:0015031|GO:0030906|GO:0042147
Mtr5g0900 794 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 35A 2 794 - -
Mtr5g0900 794 PANTHER VACUOLAR SORTING PROTEIN 35 2 794 IPR005378 GO:0015031|GO:0030906|GO:0042147
Mtr5g0900 794 SUPERFAMILY ARM repeat 215 756 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0900 Mtr-Chr5 8937805 8949687 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0900 K18468 - gmx:100811902 1432.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0900 5 8937805 8949687 Mtr5g0900 5 8937805 8949687 ECH