Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0839 ATGAACCCTCTAATTTTCTTTCTATTTTCACTCATCTTAGCATCAACAAACACAGAATCAAAAACACATTGGTTAGACACAAAATCTCTAAAACAACTCAAACAAAACATAAACCGTAATTCAATAACCCCAGGCTCATGCATCAGCTCCTGGGACTTCACCTTTGACCCATGTGACAATCTCTTCAGTGAAAAATTCACCTGCGGATTCAGATGTGACACCATCATCTCCAATCTGAGTCGAGTCACTGAACTCACTCTCGACCAAGCTGGTTACTCAGGCTCACTTAGCATAGACAATTTTCCTTATCTCAACACACTAGATGTTTCAAACAACTACTTCACTGGTAACATACCAGAATCTTTGTCTAGCTTAACTCGTTTGAGTCGACTCATTCTTTCATCAAACTCTTTCACTGGAGAAATACCATCTTCCATTGGATCTCTTACAAATCTAGAAGAGTTGTATCTTGATAACAACAATCTTCAAGGAACGGTTCCTTCAAGTTTCAACTATCTTAAAAGCTTAACTAGGCTTGATCTTCAACAAAATAAGCTCAGTGGAAAAATACCTAATTTGGGTTCTCTTGAAAATCTTTACTACATGGATCTTAGTAATAATGGATTTTCCGGTGACCCGTTTGGATTTCCGGCGTCTTTGGTTCAGATTTCAATGAGGAACAATAATTTAAGTGGTAGTTTAGCTTCTGAAAGCTTCAAGAATTTGAATTATCTGCAGGTTGTGGATTTCAGTTCAAACAAAATCAATGGCTATGTTCCTTCTATATTCTTTCAGCTTCCATCTTTGCAACAGTTAACACTTTCATTCAACGAATTTTCCTCCATTGAAGCTCCTTCTTATGGAACAGAATCATCTCAAAGCGAGCTTATAGCGGTTGATTTGAGTAATAACCAGCTTGAAGGTTTTTTACCTGCGTTTTTAGCTACGATGCCAAAGCTTTCTTCTTTGTCTTTGGAGAATAACCGGTTCACCGGTTTAATACCGGTTCAGTTTGCATTGAAAACGGTTTTTCCTGAAATTGGGATGGCTCCGTTTGGGAGGCTTTTGTTGGGAGGAAATTATTTGCTCGGTGGGATACCTCGTCCTTTGCTTGTTCTTAAACAAGATTCTGCTAATGTCAGTTTAGTTGATAATTGTTTGTTTAGGTGTCCTCATGTTTTCTTTTTTTGTCAAGGTGGAACACAAAAATCATCTTTTGAATGTAGTAGTGTAATTATTCCTTAG 1245 0.3751 MNPLIFFLFSLILASTNTESKTHWLDTKSLKQLKQNINRNSITPGSCISSWDFTFDPCDNLFSEKFTCGFRCDTIISNLSRVTELTLDQAGYSGSLSIDNFPYLNTLDVSNNYFTGNIPESLSSLTRLSRLILSSNSFTGEIPSSIGSLTNLEELYLDNNNLQGTVPSSFNYLKSLTRLDLQQNKLSGKIPNLGSLENLYYMDLSNNGFSGDPFGFPASLVQISMRNNNLSGSLASESFKNLNYLQVVDFSSNKINGYVPSIFFQLPSLQQLTLSFNEFSSIEAPSYGTESSQSELIAVDLSNNQLEGFLPAFLATMPKLSSLSLENNRFTGLIPVQFALKTVFPEIGMAPFGRLLLGGNYLLGGIPRPLLVLKQDSANVSLVDNCLFRCPHVFFFCQGGTQKSSFECSSVIIP* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0839 414 Gene3D Ribonuclease Inhibitor 25 192 IPR032675 -
Mtr5g0839 414 Pfam Leucine Rich Repeat 104 125 IPR001611 GO:0005515
Mtr5g0839 414 SUPERFAMILY L domain-like 46 370 - -
Mtr5g0839 414 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 4 413 - -
Mtr5g0839 414 Gene3D Ribonuclease Inhibitor 193 405 IPR032675 -
Mtr5g0839 414 PANTHER OS10G0469600 PROTEIN 4 413 - -
Mtr5g0839 414 SMART LRR_typ_2 149 172 IPR003591 -
Mtr5g0839 414 SMART LRR_typ_2 125 148 IPR003591 -
Mtr5g0839 414 SMART LRR_typ_2 266 289 IPR003591 -
Mtr5g0839 414 SMART LRR_typ_2 317 340 IPR003591 -
Mtr5g0839 414 SMART LRR_typ_2 173 196 IPR003591 -
Mtr5g0839 414 ProSiteProfiles Leucine-rich repeat profile. 175 197 IPR001611 GO:0005515
Mtr5g0839 414 Pfam Leucine rich repeat 220 278 IPR001611 GO:0005515
Mtr5g0839 414 Pfam Leucine rich repeat 150 208 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0839 Mtr-Chr5 8231126 8232796 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0839 176 373 Receptor kinase-like Gene Family AT3G28890 30.882 8.60e-11 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0839 - - gmx:100811366 547.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0839 5 8231126 8232796 Mtr5g0839 5 8231126 8232796 ECH