Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0781 ATGGTGCACAGTGCGTACGATAGTTTCGAACTCGTTCCCAATTTCAACGGCAAGATCGAATCAATTGAATCCTACGGTCCAAAACTTCTACTCGGTTGCTCCGATGGATCTCTCCGAATCTACTCGCCGGAAACAGAATTCTCCGATCATTCCAAACCTTACACACTCGAGAAGAATCTCGTCAATTTCGCGAAGAAGCCTGTTGTGTCAATGGAAGTTGTAGAATCGAGAGAGCTTCTTCTATCGCTTTCTGAATCAATCGCTTTTCATAGATTACCAAGTTTGGAAACTATAGCGGTTATTACGAAAGCTAAAGGAGCTAATGTGTTTTGCTGGGATGATCGGAGAGGTTTTCTCGCTTTTGCGAGACAAAAGCGTGTTGGCATTTTTAGACATGATGGTGGTAGGGGGTTTGTGGAGGTGAAAGAGTTTGGTGTACCGGACATGGTGAAGTCCATGAGTTGGTGTGGGGAGAATATATGTTTGGGGATTAGAAGGGAATATGTGATTTTGAATGCTTCAAATGGTGCTTTGTCTGAGGTTTTTACTTCTGGGAGACTAGCGCCGCCTTTAGTAGTGCCTATTCCGTCGGGAGAGCTGCTTCTTGGAAAGGAGAACATCGGGGTCTTTGTGGATCAAAATGGGAAACTTATTCCTGAAGGCAGGATTTGTTGGTCAGAGGCACCCTTGGAAGTCGTGATTCAGAAGCCGTATGCTATAGCTTTGCTGCCTAGATTCGTGGAGATTCGATCTCTTCGACAACCTTATCCGTTGATACAAACTATTGTTCTTCGCAATGTTCGTCATCTCTGCCAAAGCAGTAATTCCGTGATACTTGCTTTGGATAATTCTATTCAAGGTCTCTTTCCGGTTCCTCTTGGAGCCCAGATTGTCCAACTAACTGCTTCTGGAAACTTTGAAGAGGCCTTGTCATTGTGCAAGCTGCTTCCACCTGAAGATTCAAGTCTTCGTGCTGCAAAAGAGGGATCAATTCATATAAGATATGCCCACTATCTTTTTGAAAATGGGAGCTATGAGGAGGCTGTGGAACATTTTCTAGAATCTCAAGTAGATATAACCTATGTGCTTTCTCTTTATCCATCCATTATCCTTCCAAAGACAACTATTGTTCATGAGCCAGAGAAGTTGGACATTGATGGGGATGCTTCCTATCTTTCCAGAGTTTCGTCAGGTGTTTCAGATGATATGGAACCCTTACCAACCGATGAGAATGCAGCACTTGAATCCAAAAAAACGAATCATAATATGCTTATGGCTCTCATAAAATATTTGCAGAAGAAGAGAGGCAATTTTATTGAGAAGGCTACTGCAGAGGGAACTGAAGAAGTTGTTTTAGATGCAGTTGGCGATAACTATGCATCCTACAATAGGTTTAAGAAAGCAAACAAGGGGCGTGGTAATATTTCGGTTGGTTCTGGAGCTCGGGAGATGGCTTCAATATTAGACACTGCTCTACTCCAAGCATTGCTTCTTACTGGACAATCTTCAGCAGCTTTAGAAATACTAAGAGGTGTCAATTACTGTGATATGAAAATATGTGAAGAAATACTTCGAAAAGGCAACCTTAATGCGGCTTTATTAGAACTTTACAAGTGCAAGTCATTGCACCGGCAAGCTCTTGAACTTCTTCACAAGCTGGTGGACGAGTCAAGATCTAGCCAGTCTGAAATTACCCAAAGGTTCAAGCCTGAGGACATTGTTGAGTATCTCAAGCCGCTATGTGAGACGGACCCCATACTTGTTCTGGAATTCTCAATGCTTGTTCTTGAAAGCTGTCCATCCCAAACTATTGAGCTCTTTCTGTCTGGAAATATACCAGCTGATATGGTGAACTCATATTTGAAGCAGCACTCTCCAAACATGCAAGCTAGGTACTTGGAGCTCATGCTTGCAATGAATGAGAATGCCATATCTGGCAATCTGCAAAATGAAATGGTAAACATCTACCTATCTGACGTACTTGATTGGCATGCCGACTTAAATGCTCAACAAAATTGGGACGAGAAAACTCATACCCCAACTAGGAAAAAATTATTGTCGGCTTTAGAAGGCATATCGGGATACAATCCAGAGGCTCTGCTGAAACGTCTTCCTCAAGATGCTTTATATGAAGAGCGTGCAATATTGTTGGGAAAAATGAACCAACATGAACTTGCATTATCTCTGTATGTTCATAAGCTTCATGTTCCAGAATTGGCATTATCATATTGTGATCGGGTGTACGAGTCCAAGCATCAGCCATCTCTAAAAAATTCTAGCAACATATACCTATTGCTTATGCAAATCTATTTGAATCCTCGAAAGACCACAGCAAGCTTTGAAATGAGACTTACAAATCTATTATCCCCACAAAATACAGCCATTTCTAGAGGTAGTGCACCATCCGTAAAAAGTAAAGGGGGCCGAGGATCAAAGAAAATTGCGGAGATTGAGGGTGCAGAGGACACAAAAGTTAGTTTGAGCAGCACTGACAGTAGCAAGAGTGATGGTGATGTTGATGAATTTAATGAGGGTGGCTCTACTATCATGCTTGATGAGGTCCTTGATCTGTTGAGCCGCAGGTGGGATAGAATAAATGGAGCTCAGGCCCTTAAACTTTTACCGAGAGAGACTAAGTTACAGGATTTGCAATCATTTCTTGGGCCTCTTTTGAGAAAATCTAGTGAAATGTACCGTAACTGTTCAGTGATCAAGAGCTTGCGACAGAGCGAAAACCTTCAGGTGAAAGATGAACTGTATTGTCAGAGGAAAGCAGTTGTGAAGGTAACCAGCGATAGCATGTGTTCTCTGTGCCGAAAGAAAATAGGGACTAGTGTTTTTGCTGTCTACCCCAACGGGAGCACTCTTGTGCACTTTGTCTGTTTTAAAGATTCTCAAAAAATGAAAGCAGTGACCAAAGGGTCTCAGTTGAGGAAGCGATGA 2943 0.423 MVHSAYDSFELVPNFNGKIESIESYGPKLLLGCSDGSLRIYSPETEFSDHSKPYTLEKNLVNFAKKPVVSMEVVESRELLLSLSESIAFHRLPSLETIAVITKAKGANVFCWDDRRGFLAFARQKRVGIFRHDGGRGFVEVKEFGVPDMVKSMSWCGENICLGIRREYVILNASNGALSEVFTSGRLAPPLVVPIPSGELLLGKENIGVFVDQNGKLIPEGRICWSEAPLEVVIQKPYAIALLPRFVEIRSLRQPYPLIQTIVLRNVRHLCQSSNSVILALDNSIQGLFPVPLGAQIVQLTASGNFEEALSLCKLLPPEDSSLRAAKEGSIHIRYAHYLFENGSYEEAVEHFLESQVDITYVLSLYPSIILPKTTIVHEPEKLDIDGDASYLSRVSSGVSDDMEPLPTDENAALESKKTNHNMLMALIKYLQKKRGNFIEKATAEGTEEVVLDAVGDNYASYNRFKKANKGRGNISVGSGAREMASILDTALLQALLLTGQSSAALEILRGVNYCDMKICEEILRKGNLNAALLELYKCKSLHRQALELLHKLVDESRSSQSEITQRFKPEDIVEYLKPLCETDPILVLEFSMLVLESCPSQTIELFLSGNIPADMVNSYLKQHSPNMQARYLELMLAMNENAISGNLQNEMVNIYLSDVLDWHADLNAQQNWDEKTHTPTRKKLLSALEGISGYNPEALLKRLPQDALYEERAILLGKMNQHELALSLYVHKLHVPELALSYCDRVYESKHQPSLKNSSNIYLLLMQIYLNPRKTTASFEMRLTNLLSPQNTAISRGSAPSVKSKGGRGSKKIAEIEGAEDTKVSLSSTDSSKSDGDVDEFNEGGSTIMLDEVLDLLSRRWDRINGAQALKLLPRETKLQDLQSFLGPLLRKSSEMYRNCSVIKSLRQSENLQVKDELYCQRKAVVKVTSDSMCSLCRKKIGTSVFAVYPNGSTLVHFVCFKDSQKMKAVTKGSQLRKR* 981
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0781 980 Pfam Region in Clathrin and VPS 616 747 IPR000547 GO:0006886|GO:0016192
Mtr5g0781 980 Pfam Vacuolar sorting protein 39 domain 1 488 596 IPR019452 -
Mtr5g0781 980 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 591 778 IPR000547 GO:0006886|GO:0016192
Mtr5g0781 980 ProSiteProfiles Citron homology (CNH) domain profile. 16 277 IPR001180 -
Mtr5g0781 980 PANTHER VACUOLAR SORTING PROTEIN 39 1 980 - -
Mtr5g0781 980 MobiDBLite consensus disorder prediction 793 842 - -
Mtr5g0781 980 Pfam Vacuolar sorting protein 39 domain 2 855 963 IPR019453 -
Mtr5g0781 980 SUPERFAMILY WD40 repeat-like 25 183 IPR036322 GO:0005515
Mtr5g0781 980 Pfam CNH domain 28 272 IPR001180 -
Mtr5g0781 980 PANTHER CNH DOMAIN CONTAINING 1 980 IPR032914 GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0781 Mtr-Chr5 7694084 7701872 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0781 K20183 - gmx:100805342 1628.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0781 5 7694084 7701872 Mtr5g0781 5 7694084 7701872 ECH