Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0778 ATGTGGCGTTGCGTCGCTCGTGGACTTCGCGTTCCACGTTCTTCTAACAGATCCAATAACTCTCTCGGATCTCGTCTTTCTAGATTCTTCTCCAGTGAGTCTTACACCGTCGTGGATCATAAATATGATGCAGTTGTGGTAGGTGCTGGTGGTGCTGGATTAAGAGCTGCTATTGGACTTTCTGAACATGGATTCAATACTGCTTGTATTACCAAGCTTTTCCCAACTCGTTCACACACTGTTGCAGCTCAGGGTGGCATAAATGCTGCATTGGGAAATATGACTGAAGATGACTGGAGGTGGCACATGTACGACACTGTCAAAGGAAGTGATTGGCTAGGAGATCAGGATGCCATCCAATATATGTGTAGGGAAGCACCAAAAGCGGTTATTGAACTAGAGAATTATGGATTGCCTTTTTCTCGAACAGAGGATGGAAGAATATATCAACGTGCATTTGGTGGTCAGAGCTTAAACTTTGGAAAAGGTGGTCAAGCTTACCGTTGTGCATGCGCTGCTGATCGAACTGGGCATGCTTTATTGCACACTCTCTATGGCCAGGCTATGAGACACAATACACAGTTTTTTGTGGAATATTTTGCCTTAGATCTTATAATGAATAGTGATGGTAGTTGCCAAGGTGTAATTGCCTTAAACATGGAGGATGGAACACTGCATCGTTTCCAAGCTGCTTCAACAATTTTGGCCACTGGGGGTTATGGTAGAGCATACTTCTCAGCAACTTCAGCACATACATGCACCGGAGATGGCAATGCCATGGCTGCCCGTGCTGGGATCGGACTTGAGGATTTAGAGTTTGTGCAATTTCACCCAACGGGTATATATGGAGCAGGTTGCCTTATAACAGAAGGTTCTCGTGGTGAAGGTGGAATTCTTAGGAATAGCGAGGGGGAGCGGTTTATGGAACGATATGCTCCTACAGCAAAGGATCTTGCATCCAGAGATGTAGTTTCAAGATCGATGACTATGGAGATCCGGGAAGGACGTGGTGTAGGACCCGAGAAAGATCACATCTATCTACACTTGAATCATCTACCTCCAGATGTGCTCAAGGAGAGACTTCCTGGTATCTCTGAAACTGCTGCTATTTTTGCTGGTGTGGATGTTACAAAGGAACCCATTCCTGTTTTGCCAACTGTGCATTATAACATGGGTGGCATTCCCACAAATCATCATGGAGAGGTGGTTACCATTAAAGGAGACGATCCAGATGCATTAGTTCCTGGATTGATGGCTGCTGGGGAAGCAGCCTGTGCATCGGTTCATGGCGCCAACAGACTTGGTGCAAATTCACTTTTGGATATTGTTGTTTTCGGTAGAGCTTGTGCAAATAGAGTTGCAGAAATTCATAAGCCAGGAGAGAAACAAAAGCCATTAGAGAAGGATGCTGGCCAGAAAACGATTGCATGGCTGGACAAATTGAGAAATTCTAATGGTTCATTGCCTACTTCAAAAATTCGGTTGAATATGCAAAAAGTAATGCAAAATAATGCTGCTGTATTCCGTACACAAGAAACATTAGAAGAAGGTTGTCAATTAATTGATAAAACGTGGGAGAGTTTCCATGATGTCAAGGTTGAAGACAGAAGTTTGATATGGAACTCCGATTTGATTGAGACTATTGAGTTGGAAAATCTTTTGATAAATGCCTGCGTCACAATGCACTCTGCAGAAGCTAGGAAAGAGAGTAGAGGAGCTCATGCCCGTGAGGACTTCACGACAAGAGATGATGAGAAGTGGATGAAACACACTTTGGGATTCTGGGAGAACGAGAAAGTCCGATTGGATTACAGGCCTGTGCATTTGAATACATTGGATGATGAGGTTGAATCATTCCCTCCTAAGGCTCGTGTGTATTAA 1881 0.4407 MWRCVARGLRVPRSSNRSNNSLGSRLSRFFSSESYTVVDHKYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGRIYQRAFGGQSLNFGKGGQAYRCACAADRTGHALLHTLYGQAMRHNTQFFVEYFALDLIMNSDGSCQGVIALNMEDGTLHRFQAASTILATGGYGRAYFSATSAHTCTGDGNAMAARAGIGLEDLEFVQFHPTGIYGAGCLITEGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRSMTMEIREGRGVGPEKDHIYLHLNHLPPDVLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHHGEVVTIKGDDPDALVPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACANRVAEIHKPGEKQKPLEKDAGQKTIAWLDKLRNSNGSLPTSKIRLNMQKVMQNNAAVFRTQETLEEGCQLIDKTWESFHDVKVEDRSLIWNSDLIETIELENLLINACVTMHSAEARKESRGAHAREDFTTRDDEKWMKHTLGFWENEKVRLDYRPVHLNTLDDEVESFPPKARVY* 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0778 626 Pfam FAD binding domain 43 439 IPR003953 -
Mtr5g0778 626 Gene3D succinate dehydrogenase protein domain 577 626 - -
Mtr5g0778 626 PANTHER SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT 3 626 IPR030664 -
Mtr5g0778 626 ProSitePatterns Fumarate reductase / succinate dehydrogenase FAD-binding site. 77 86 IPR003952 GO:0016491
Mtr5g0778 626 PIRSF SDHA_APRA_LASPO 32 615 - -
Mtr5g0778 626 Gene3D - 43 450 IPR036188 -
Mtr5g0778 626 Gene3D Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 281 384 IPR027477 -
Mtr5g0778 626 PANTHER SUCCINATE DEHYDROGENASE [UBIQUINONE] FLAVOPROTEIN SUBUNIT, MITOCHONDRIAL 3 626 - -
Mtr5g0778 626 SUPERFAMILY FAD/NAD(P)-binding domain 35 462 IPR036188 -
Mtr5g0778 626 TIGRFAM sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit 43 626 IPR014006 GO:0016627|GO:0022900|GO:0050660
Mtr5g0778 626 Gene3D - 466 576 - -
Mtr5g0778 626 Pfam Fumarate reductase flavoprotein C-term 495 626 IPR015939 GO:0016491
Mtr5g0778 626 SUPERFAMILY Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 485 626 IPR037099 GO:0016491
Mtr5g0778 626 TIGRFAM sdhA_forward: succinate dehydrogenase, flavoprotein subunit 40 626 IPR011281 GO:0006099|GO:0016627|GO:0050660
Mtr5g0778 626 SUPERFAMILY Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 271 389 IPR027477 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0778 K00234 - egr:104419754 1175.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0778 5 7656647 7664201 Mtr5g0778 5 7656647 7664201 ECH