Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0493 ATGCAAGTTCTTGTTCACCACACACCAATTCTTGTGCAGTTGATGCGTTGTTCTTGTTTCAGTCTAAGGAGTTTCTCTCTCAAACCTCGCTCTCATTTTCCTCTTCACTACGAATGCGACGAATCTCAGCTCCTTCACTACCTAACAAATGGGTTTCTTCACGAAGCACGAACAATTCTTCACTCTTTCCCATCCGGAAACATCCACTCCCGTGTTGTTCACTGGACTTCCATGCTCACCAACTATGCTAAACATGGTTACGTTGAACAAGCACGAAACTTGTTTGATATAATGCCTCATAGAAACATTGTCACTTACAATGCAATGTTGTCCGCATATCTTCAATCTGGTATGACCCGTCAAGCGAAACGGTTTTTTGATGATATGCCGGAGAGAAATGTTGTGTCTTGGACTGCAATGCTGAGTGGGTATGCTGGTTTGGGGTGGATTGATGATGCGAGGAAGGTGTTTGATGAAATGCCTGAGAGGAATGTTGTTTCGTGGAACTCGATGGTGGTGGGTTTGATTAGGAATGGTGATTTGGAGGAAGCGAGAAAGGTTTTTGATGATACCCCTGATAAAAATGTGGTGTCTTGGAATGCTATGATTGAGGGTTATGTTGAAAATGGTAGAATGGATGACGCGAAGGATTTGTTTGATCAAATAGAGTGTAGGAATGTGATTACTTGGACTAGCATGATATCTGGGTATTGTCGTGTGGGTGATGTGAATGAGGCTTTTCGTTTGTTTCAAATTATGCCGGAGAAAAATGTTGTTTCTTGGACTGCAATGATTGGTGGGTTTGCTTGGAATGGATTCTATCGAGAGGCATTGTTACTTTTTCTTGATATGATGACACTTTCTGATGCTAAGCCTAATGAAGAGACCTTTGTTTCTCTTGTATATGCATGTGCTGGTATGGGGTTTCCTTGTCTTGGCAAGCAATTGCATGCTCAGATGATTCTTAATAGATGGAAGCTTGATGATTATGATTGTAGGTTAGGGAGAAGTCTTGTTAGGATGTACTCTGTGTGTGGTCTTATGGACTCAGCACGCAGTGTCTTCGAAGGTGATATGAAAAATTGCGATGATCAGTCTTTCAATTCTATGATAAATGGTTATGTTCAGGCTGGTCAATTACATAAGGCTCAAGAGTTGTTTGACACGGTCCCTATTCGAAACAAAATTGCTTGGACTTGCATGATTTCTGGATATCTTAGTGCTGGACAAGTATTAAAGGCAAGCAATCTCTTTGATGACATGCCTGATAGTGATAAGGATTCCATTGCATGGACTTTAATGATTTATGGGTATGTCCAAAATGAGCTAATTGCTGAAGCCATCAACTTATTTGCTGAGATGATGGCTCAAGGTGCTTCTCCTATAAATTCTACTTATGCTGTTCTTTTTGGAGCCGTGGGTTCTGTTGCATATCTTGATCTAGGGTGGCAATTGCATGCTATGCAGCTAAAGACTATTTATGAATATGAATATGACGTGTATCTTGAAAACTCTCTGATTTCAATGTATGCAAAATGTGGGGAGATAGAGGATGCATATAGGATATTCTCAAACATGAATTGTCGAGACAAAATTTCGTGGAACTCCATGATCATGGGCCTTTCAGATCATGGTAGGGCCAATGAAGCTTTGAATATGTATGAAACCATGCTTGAATTTGGAGTTTACCCAGATGCTGTTACTTTCCTTGGTGTCCTAACAGCATGTGCTCATGCTGGTTTTGTTGATAAAGGGTGCGAGTTATTTAGTGTTATGCTCAATGATTATGCACTTCAACCTGGTTTGGAACATTATGTAAGCATTATCAATATTCTGGGCCGGGCAGGAAGAGTGAAGGATGCAGAGGAGTTTGTGTTGAGGCTACCTGTTGAACCAAATCATACCATTTGGGGAGCATTGATTGGAGTATGTGGTTTGAGTAAAACAGATGCAGATATTGCTAGACGTGCAGCCACACGATTACTTGAGTTGGATCCTCTGAATGCACCAGGTCATGTGACCCTTTGCAACATATACGCTGCAAATGATAGGCACCTTGAGGAGACAAGTTTAAGAAGAGAAATGAGGATGAAAGGTGTGAGGAAGGCACCTGGTTGTAGTTGGATATTAGTGAAGGGTAAAGTTCATGCTTTCTCATCTGGAGATAGATTAGATCCACTAGCAGAAGAAATGTTGCTACAAAGTTGA 2208 0.4103 MQVLVHHTPILVQLMRCSCFSLRSFSLKPRSHFPLHYECDESQLLHYLTNGFLHEARTILHSFPSGNIHSRVVHWTSMLTNYAKHGYVEQARNLFDIMPHRNIVTYNAMLSAYLQSGMTRQAKRFFDDMPERNVVSWTAMLSGYAGLGWIDDARKVFDEMPERNVVSWNSMVVGLIRNGDLEEARKVFDDTPDKNVVSWNAMIEGYVENGRMDDAKDLFDQIECRNVITWTSMISGYCRVGDVNEAFRLFQIMPEKNVVSWTAMIGGFAWNGFYREALLLFLDMMTLSDAKPNEETFVSLVYACAGMGFPCLGKQLHAQMILNRWKLDDYDCRLGRSLVRMYSVCGLMDSARSVFEGDMKNCDDQSFNSMINGYVQAGQLHKAQELFDTVPIRNKIAWTCMISGYLSAGQVLKASNLFDDMPDSDKDSIAWTLMIYGYVQNELIAEAINLFAEMMAQGASPINSTYAVLFGAVGSVAYLDLGWQLHAMQLKTIYEYEYDVYLENSLISMYAKCGEIEDAYRIFSNMNCRDKISWNSMIMGLSDHGRANEALNMYETMLEFGVYPDAVTFLGVLTACAHAGFVDKGCELFSVMLNDYALQPGLEHYVSIINILGRAGRVKDAEEFVLRLPVEPNHTIWGALIGVCGLSKTDADIARRAATRLLELDPLNAPGHVTLCNIYAANDRHLEETSLRREMRMKGVRKAPGCSWILVKGKVHAFSSGDRLDPLAEEMLLQS* 736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0493 735 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 192 259 - -
Mtr5g0493 735 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 105 195 - -
Mtr5g0493 735 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 42 105 - -
Mtr5g0493 735 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 260 722 - -
Mtr5g0493 735 Gene3D Tetratricopeptide repeat domain 133 192 IPR011990 GO:0005515
Mtr5g0493 735 Gene3D Tetratricopeptide repeat domain 329 392 IPR011990 GO:0005515
Mtr5g0493 735 Gene3D Tetratricopeptide repeat domain 41 132 IPR011990 GO:0005515
Mtr5g0493 735 Gene3D Tetratricopeptide repeat domain 193 255 IPR011990 GO:0005515
Mtr5g0493 735 Pfam PPR repeat 366 388 IPR002885 -
Mtr5g0493 735 Pfam PPR repeat 604 625 IPR002885 -
Mtr5g0493 735 Pfam PPR repeat 504 527 IPR002885 -
Mtr5g0493 735 Pfam PPR repeat 135 165 IPR002885 -
Mtr5g0493 735 Pfam PPR repeat 166 190 IPR002885 -
Mtr5g0493 735 Pfam PPR repeat 397 423 IPR002885 -
Mtr5g0493 735 Pfam PPR repeat 259 285 IPR002885 -
Mtr5g0493 735 SUPERFAMILY TPR-like 36 221 IPR011990 GO:0005515
Mtr5g0493 735 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 105 195 - -
Mtr5g0493 735 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 42 105 - -
Mtr5g0493 735 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 260 722 - -
Mtr5g0493 735 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 192 259 - -
Mtr5g0493 735 Pfam PPR repeat family 530 577 IPR002885 -
Mtr5g0493 735 Pfam PPR repeat family 426 472 IPR002885 -
Mtr5g0493 735 Pfam PPR repeat family 101 134 IPR002885 -
Mtr5g0493 735 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 499 529 IPR002885 -
Mtr5g0493 735 Gene3D Tetratricopeptide repeat domain 393 498 IPR011990 GO:0005515
Mtr5g0493 735 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 363 397 IPR002885 -
Mtr5g0493 735 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 226 260 IPR002885 -
Mtr5g0493 735 Gene3D Tetratricopeptide repeat domain 504 720 IPR011990 GO:0005515
Mtr5g0493 735 Pfam PPR repeat 195 222 IPR002885 -
Mtr5g0493 735 Pfam PPR repeat 225 253 IPR002885 -
Mtr5g0493 735 Gene3D Tetratricopeptide repeat domain 256 323 IPR011990 GO:0005515
Mtr5g0493 735 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 530 564 IPR002885 -
Mtr5g0493 735 SUPERFAMILY TPR-like 368 684 IPR011990 GO:0005515
Mtr5g0493 735 TIGRFAM PPR: pentatricopeptide repeat domain 504 530 IPR002885 -
Mtr5g0493 735 TIGRFAM PPR: pentatricopeptide repeat domain 532 566 IPR002885 -
Mtr5g0493 735 TIGRFAM PPR: pentatricopeptide repeat domain 104 135 IPR002885 -
Mtr5g0493 735 TIGRFAM PPR: pentatricopeptide repeat domain 430 461 IPR002885 -
Mtr5g0493 735 TIGRFAM PPR: pentatricopeptide repeat domain 397 424 IPR002885 -
Mtr5g0493 735 TIGRFAM PPR: pentatricopeptide repeat domain 166 190 IPR002885 -
Mtr5g0493 735 TIGRFAM PPR: pentatricopeptide repeat domain 228 259 IPR002885 -
Mtr5g0493 735 TIGRFAM PPR: pentatricopeptide repeat domain 366 388 IPR002885 -
Mtr5g0493 735 TIGRFAM PPR: pentatricopeptide repeat domain 135 166 IPR002885 -
Mtr5g0493 735 TIGRFAM PPR: pentatricopeptide repeat domain 197 226 IPR002885 -
Mtr5g0493 735 Pfam E motif 650 709 IPR046848 -
Mtr5g0493 735 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 164 198 IPR002885 -
Mtr5g0493 735 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 427 461 IPR002885 -
Mtr5g0493 735 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 102 136 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0493 Mtr-Chr5 4609336 4612205 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0493 48 731 Glycoside Hydrolase AT3G49170 29.506 1.07e-84 284
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0493 - - gmx:102669560 1078.54