Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0486 ATGGACTCAACGCAGAACAATCTCTTCGACACCGCTTCACAACCCGACACAGGAACCGACGCATACACTTTCCTCGAATTCAACACCCAAGGCGAAGATTTCGACTATCCTGACTTTCGCGACCCGATTAGGTCACCCGTTGCGTGGCCTACACCTTCCGATTCGCTCGCTGACCCGTCTGGCTCCGCCGGGTCGGATCATCACTCGGATGCATCTCCCGTTTCTGCTGCTCCTACAAAAGGTGGTAGGTCCGGTGGAGGAAGTGGAAGCGGGTCACAGATGGTGGATTCGCTTGCTTCTGGGATGAGTGGGTTGAATTTTGAAGATACTGGTGATGACGATAATTATGAATTTGGAAAAGGGGATTTTACTGAACATGCTTGTCGTTATTGTGGAGTTTCAAATCCTGCCTGTGTTGTTAGGTGTAATGTGCCTTCGTGTCGAAAATGGTTTTGTAATTCAAGAGGAAATACTTCTGGATCGCACATTGTCAATCATCTGGTTCGGGCAAAGCACAAGGAAGTCTGTCTGCACAAAGACAGTCCATTGGGAGAAACAATTCTTGAATGCTACAACTGTGGGTGTCGTAATGTGTTTCTCCTTGGGTTTATATCTGCAAAGACAGAAAGTGTAGTTGTTCTTCTTTGTCGTGAACCTTGTTTGAGTGTCAATGCTTTGAAGGATATGAATTGGGATCTTACTCAATGGTGTCCCTTGATTGATGATAGGTGTTTCTTGCAGTGGCTTGTCAAGATCCCATCTGAGCAGGAGCAGTTAAGGGCACGCCAAATAAGTGCACAGCAAATAAATAAGGTGGAAGAATTGTGGAAGACAAACCCCGATGCTTCTTTTGAGGACCTTGAGAAGCCTGGTGTAGACGATGAACCTCAGTCAGTGGCTTTGAAATATGAAGATGCATATCAGTATCAAAACGTATTTGCACCTCTCATTAAGCTTGAAGCTGATTATGATAAGATGATGAAAGAATCACAAAGCAAGGACAACCTCACAATTCGATGGGATATTGGTCTCAATAAGAAGCGCGTTGCATATTTTGTATTTCCAAAGGAAGATAATGAGTTACGGCTTGTACCTGGTGATGAGCTACGTTTGCGTTATTCCGGTGATGCTGCACATCCTTCGTGGCAGTCAGTGGGTCATGTGATTAAGCTAACTGCACAAGAGGAGGTTGCATTGGAACTTCGGGCTAGTCAGGGGGTTCCTGTTGATGTCAACCATGGTTTCAGTGTTGATTTTGTCTGGAAAAGTACCAGCTTTGATAGGATGCAAGGAGCTATGAAAACCTTTGCTGTAGATGAGACAAGTGTCAGTGGGTATATATATCACCACTTACTGGGTCATGAAGTTGAGGTTCAGATGGTGCGTAATGCATTGCCCCGTCGCTTTGGTGCACCGGGTCTTCCAGAACTGAATGCATCTCAAGTATATGCTGTCAAGAGTGTTCTTCAGAGGCCTATTAGTTTGATTCAAGGGCCACCTGGAACTGGTAAGACTGTTACTTCTGCAGCACTTGTATATCACATGGCCAAACAAGGTCAGGGACAGGTTTTGGTTTGTGCACCTAGTAATGTAGCCGTGGACCAGTTGGCTGAAAAGATAAGTGCTACTGGATTGAAGGTTGTGAGGCTTTGTGCAAAGTCAAGGGAAGCTGTGAGTTCACCTGTTGAGCATTTAACTCTTCACTATCAGGTTCGACATCTTGACACATCTGATAAGAGTGAACTGCACAAGTTACAACAGCTAAAGGATGAACAAGGAGAACTTTCTAGCAGTGATGAGAAGAAATACAAAGCACTTAAGCGAGCTACAGAGAGGGAGATTTCTCAGAGTGCTGATGTGATTTGCTGTACATGTGTTGGGGCTGGAGATCCCAGGCTTGCTAATTTTAGATTTCGTCAGGTACTTATTGACGAGTCCACTCAAGCAACAGAACCTGAATGTCTCATTCCTTTGGTTCTTGGAGCAAAGCAGGTTGTTCTTGTTGGTGATCATTGTCAGCTTGGTCCAGTTATTATGTGCAAGAAAGCAGCACGGGCTGGGTTAGCACAATCACTTTTTGAACGCCTTGTTCTTCTTGGTGTCAAACCAATAAGGTTGCAGGTTCAGTACCGTATGCATCCATGCCTTTCAGAATTTCCCTCAAACAGTTTTTATGAAGGCACCCTACAAAATGGAGTTACTGTTAATGAGAGACAATCTACAGGAATTGATTTTCCTTGGCCTGTTCCAAACCGTCCCATGTTTTTTTATGTTCAGATGGGACAAGAAGAGATAAGTGCTAGTGGTACATCTTATTTGAATAGGACCGAGGCTGCAAACGTTGAAAAGATTGTAACTACTTTTTTAAAAAGTGGTGTGGTTCCGAGTCAGATCGGTGTTATAACACCTTACGAGGGGCAAAGAGCTTATATTGTAAACTATATGTCAAGAAATGGTGCTCTTAGGCAGCAACTTTACAAAGAGATTGAGGTTGCTAGTGTCGATTCCTTTCAAGGAAGGGAGAAAGACTATATCATTCTATCATGTGTTAGAAGTAATGAGCATCAGGGAATTGGATTCCTGAATGACCCCAGGAGACTCAATGTTGCTCTGACACGAGCAAGATATGGTATTGTTATACTGGGAAACCCTAAAGTTCTGAGCAAGCAGCCTCTGTGGAATGGTTTATTGACTCACTATAAGGAACATGAATGCTTAGTGGAAGGGCCTTTAAATAACCTGAAGCAGAGTATGGTTCAGTTCCAGAAACCCAAAAAGATTTACAATGAACGTAGGCTTTTTTATGGAGGTGGACCTGGAGTTGCCGCTAATGATAATTTTGGTTCTGGTGCTGGCACAAGTTCAGATCGGAGGACTGGTAGAGGAAGGGGATCTTATATACCTTCTGGTCCACCAAATGGAAATCACAAACCTGGATTGCATCCTGCTGGGTTTCCTGTGCAAAGGGTTCCCTTGCCTCCTTTCCATGGTGGTCCCCAGTCTCAACCATATGCCATTCCTTCTCGCGGGGCTGTTCATGGACCTGTTGGGGCAGTTCCTCATGTTCCATCTCCAGGGAGTCGGGGATTTGGGGCTGGGCGAGGTAATTCTGGTGCTTCAATTGGCAATCATCTTCCACACCAAGGCACCCAACCGCCTATTGGATCTGCATTTAATTTCCCTGCTCTAGAGAACCCCAACAGCCAGCCATCTGTTGGTGGTCCATTGTCTCAGCCTGGCTTTGCTAATAATATGCCGGTCCAAGGAGCAGGCCAGTCATTCCGAGATCAATTTTCTGTTCCTGGAATGTCTCAGGACTTCTTGGGTGATGACTTCAAGAGCCAAGGATCTCATGTTCCTTATAATGTAACTGATTTCTCGACACAGGCTTCTCAAAGTGGATATGCTGTCGATTATGCAACACAAGGAGCACAAGGTGGATTCCCAGGGAACTTTCTTAACCAGAATTCTCAAGCTGGATATTCACGCTTTGGTTCTGGAAATGATTTTATGTCTCAGGACTACATGGGCCATGGATCCCAGGGCCTTTTCACCCAGGTTGGATTCAGCGATCCCTTGCAAGATGATGCAACACAGAACCATTTCAATGTGGCTAATTCCAACCCTCTTCAGTCACAGATGAATTCACTGTACTCCCAGCCTTTTGCTCATTACAACACACAGCCACTGAATATGCAGGCTTCTCAACAACAGCCTCAGGGTCAGAGCTCCCAGAATCAAAAAATTCACTACAACGGTTGA 3762 0.4495 MDSTQNNLFDTASQPDTGTDAYTFLEFNTQGEDFDYPDFRDPIRSPVAWPTPSDSLADPSGSAGSDHHSDASPVSAAPTKGGRSGGGSGSGSQMVDSLASGMSGLNFEDTGDDDNYEFGKGDFTEHACRYCGVSNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLSVNALKDMNWDLTQWCPLIDDRCFLQWLVKIPSEQEQLRARQISAQQINKVEELWKTNPDASFEDLEKPGVDDEPQSVALKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNLTIRWDIGLNKKRVAYFVFPKEDNELRLVPGDELRLRYSGDAAHPSWQSVGHVIKLTAQEEVALELRASQGVPVDVNHGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVEVQMVRNALPRRFGAPGLPELNASQVYAVKSVLQRPISLIQGPPGTGKTVTSAALVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSDKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGVKPIRLQVQYRMHPCLSEFPSNSFYEGTLQNGVTVNERQSTGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLKSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNGLLTHYKEHECLVEGPLNNLKQSMVQFQKPKKIYNERRLFYGGGPGVAANDNFGSGAGTSSDRRTGRGRGSYIPSGPPNGNHKPGLHPAGFPVQRVPLPPFHGGPQSQPYAIPSRGAVHGPVGAVPHVPSPGSRGFGAGRGNSGASIGNHLPHQGTQPPIGSAFNFPALENPNSQPSVGGPLSQPGFANNMPVQGAGQSFRDQFSVPGMSQDFLGDDFKSQGSHVPYNVTDFSTQASQSGYAVDYATQGAQGGFPGNFLNQNSQAGYSRFGSGNDFMSQDYMGHGSQGLFTQVGFSDPLQDDATQNHFNVANSNPLQSQMNSLYSQPFAHYNTQPLNMQASQQQPQGQSSQNQKIHYNG* 1254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0486 1253 CDD SF1_C_Upf1 712 901 IPR041679 -
Mtr5g0486 1253 MobiDBLite consensus disorder prediction 944 984 - -
Mtr5g0486 1253 Gene3D - 440 710 IPR027417 -
Mtr5g0486 1253 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 485 617 IPR014001 -
Mtr5g0486 1253 Pfam RNA helicase UPF1, 1B domain 331 420 IPR040812 -
Mtr5g0486 1253 Pfam Type III restriction enzyme, res subunit 479 544 IPR006935 GO:0003677|GO:0005524|GO:0016787
Mtr5g0486 1253 Gene3D - 711 922 IPR027417 -
Mtr5g0486 1253 Gene3D - 332 420 - -
Mtr5g0486 1253 PANTHER REGULATOR OF NONSENSE TRANSCRIPTS 1-LIKE PROTEIN 102 1005 - -
Mtr5g0486 1253 Pfam AAA domain 689 884 IPR041679 -
Mtr5g0486 1253 CDD ZBD_UPF1-like 127 249 IPR018999 GO:0000184|GO:0003723|GO:0003724|GO:0005524|GO:0005737|GO:0008270
Mtr5g0486 1253 CDD 1B_UPF1-like 332 419 IPR040812 -
Mtr5g0486 1253 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 473 935 IPR027417 -
Mtr5g0486 1253 MobiDBLite consensus disorder prediction 1 95 - -
Mtr5g0486 1253 Gene3D - 562 614 - -
Mtr5g0486 1253 MobiDBLite consensus disorder prediction 1 26 - -
Mtr5g0486 1253 MobiDBLite consensus disorder prediction 1229 1253 - -
Mtr5g0486 1253 MobiDBLite consensus disorder prediction 55 69 - -
Mtr5g0486 1253 MobiDBLite consensus disorder prediction 1019 1049 - -
Mtr5g0486 1253 CDD DEXXQc_UPF1 476 711 - -
Mtr5g0486 1253 Pfam RNA helicase (UPF2 interacting domain) 126 279 IPR018999 GO:0000184|GO:0003723|GO:0003724|GO:0005524|GO:0005737|GO:0008270
Mtr5g0486 1253 PANTHER DNA2/NAM7 HELICASE FAMILY 102 1005 IPR045055 -
Mtr5g0486 1253 Pfam AAA domain 578 679 IPR041677 GO:0004386
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0486 Mtr-Chr5 4540437 4553585 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0486 K14326 - gmx:100795594 2407.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0486 5 4540437 4553585 Mtr5g0486 5 4540437 4553585 ECH