Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0484 ATGGCGGATTCGGTTGAGCTTCCGAGTCGTTTAGCAATACTTCCTTTCAGGAACAAAGTTCTCTTACCTGGTGCTATCATTCGAATTCGCTGCACTTCACCTACCAGTGTGAAGTTGGTGGAACAAGAACTGTGGCAAAGAGAAGAGAAAGGGATGATTGGCATCTTGCCAGTACGTGATACTGCTGCTTCTGCTGAAACCAAGCAACTGGGTTCCACTGTATCAGATTCTATAGATCAAACTTCCAAAGTTCATGGTGGTTCGTCAGATTCTAATGCCAAAGTTCAGAATGATGTTGTTCATTGGCATAACAGGGGGGTAGCTGCTCGAGCATTACACTTATCGAGGGGAGTGGAGAAACCAAGTGGGAGGGTCACATATATAGTTGTTCTTGAAGGTTTGTGCAGATTTAATGTCCAGGAACTAAACACAAGAGGAACATACCATACTGCTAGAATATCTTCCCTTGAGATGACTAAGACTGAGATGGAACAGGTGGAGCATGACCCGGATTTCATAATGTTGTCACGTCAATTTAAAGCAACTGCCATGGAGCTTATTTCTGTTCTGGAGCAGAAACAAAGTACTGGTGGAAGGACGAAAGTTCTTTTGGAGACTGTTCCTGTTCACAAGTTGGCTGATATATTTGTTGCTAGCTTTGAGATAAGTTTTGAAGAACAATTATCAATGTTGGATTCTGTCGATGCTAAAGTGAGGCTTTCAAAAGCAACTGAATTGGTTGACAGGCACTTACAGTCAATACGTGTAGCTGAGAAAATTACACAAAAAGTTGAAGGACAATTGTCAAAATCTCAAAAAGAATTTCTTCTGCGCCAACAGATGAAGGCTATAAAAGAGGAACTTGGTGATAATGATGATGAGGAGGATGACCTGGCTGCCCTGGAAAGGAAGATGCAAAGTGCAGGAATGCCACAAAATGTCTGGAAGCTTTCACTTCGAGAGTTAAGGAGACTGAAAAAGATGCAGCCTCAGCAACCTGGGTATAGCAGTTCACGGGCTTACCTGGAACTTCTTGCTGATCTTCCATGGCAGAAGGCCAGCAAAGAGCTTGAACTGGACTTAAGAGCTGCACAGGAACGCCTGGACAATGATCACTATGGTTTAGAGAAGGTCAAGCAGCGGATCATTGAATACCTAGCCGTTCGTAAGCTTAAGCCAGATGCAAGAGGTCCTGTGTTGTGCTTCGTTGGACCTCCTGGTGTTGGGAAAACATCATTGGCATCTTCTATTGCTGCTGCTCTGGACCGAAAATTTGTGCGCATATCCCTTGGTGGAGTCAAGGATGAGGCTGATATTAGAGGACATAGGAGAACATACATTGGAAGCATGCCAGGGAGGCTTATAGATGGACTGAAGAAAGTAGCTGTTTGCAATCCCGTCATGTTGCTAGATGAAATCGACAAGACAGGTTCTGATGTTCGCGGCGATCCAGCTTCAGCGTTGCTTGAGGTTCTTGATCCTGAACAAAATAAAACATTCAATGATCACTATTTGAATGTTCCATTCGATCTATCCAAGGTAATTTTTGTTGCTACGGCAAATAGGGCGCAACCTATTCCTCCACCCCTCCTTGACAGGATGGAAGTTATTGAGCTTCCTGGGTATACACCCGAGGAAAAGCTCAAAATAGCCATGAAGCATTTGATTCCAAGAGTTCTGGACCAACATGGATTGAGTTCTGAGTTTCTTCAAATTCCGAAGGCGATGGTGCAACTTGTTATCCAGAGATACACCAGGGAAGCTGGTGTTCGAAGTTTGGAAAGGAGTCTAGCTGCCCTTGCTCGTGCTGCTGCAGTGAGAGTAGCAGAGCAAGAACAAGTTGTTCCACTTAGCAAAGGAGTAGAGGGACTTACTACTCCACTTCTGGAAAACAGACTTGTCGATAGCGCTGAAGTGGAAATGGAAGTGATACCAATGGGTGTCAACAACCGTGACATTTCAAACACATTTAGGATCACCTCTCCATTGGTTGTTGATGAAGCTATGGTTGAAAAAGTGCTTGGGCCTCCAAAGTTTGATGGAAGAGAAACAGCAGAACGTGTTGTAACCCCTGGGATATCTGTCGGGCTGGTTTGGACTTCTGTTGGTGGAGAAGTTCAGTTTGTGGAGGCTTCAACAATGGTAGGGAAGGGTGAACTGCATCTTACTGGACAGCTTGGTGATGTGATCAAAGAATCAGCTCAAATTGCACTAACATGGGTGAGAGCAAGAGCGACTGATCTCAAACTGGCTGCTGCGGAGAGCATTAGTCTGTTGGAGGGTCGTGATATACATATACATTTCCCTGCAGGTGCAGTACCTAAAGATGGGCCTTCAGCTGGTGTGACTTTAGTCACAGCTTTGGTTTCACTTTTCAGTCAGAGAAAAGTGAGATCTGATACCGCTATGACTGGAGAGATGACTTTGAGGGGTCTAGTACTACCTGTTGGTGGTATCAAGGATAAGATACTAGCTGCACATCGATATGGTATTAAGAGAGTCATCCTACCTGAAAGGAACTTAAAGGACTTGGTTGAAGTACCACCATCGGTGCTAGCCAATTTGGAGATACTGCTTGCGAAACGAATGGAGGATGTGTTAGAACATGCTTTTGACAGTGGGTGCCCTTGGAGACAACACTCAAAGTTGTAA 2652 0.4461 MADSVELPSRLAILPFRNKVLLPGAIIRIRCTSPTSVKLVEQELWQREEKGMIGILPVRDTAASAETKQLGSTVSDSIDQTSKVHGGSSDSNAKVQNDVVHWHNRGVAARALHLSRGVEKPSGRVTYIVVLEGLCRFNVQELNTRGTYHTARISSLEMTKTEMEQVEHDPDFIMLSRQFKATAMELISVLEQKQSTGGRTKVLLETVPVHKLADIFVASFEISFEEQLSMLDSVDAKVRLSKATELVDRHLQSIRVAEKITQKVEGQLSKSQKEFLLRQQMKAIKEELGDNDDEEDDLAALERKMQSAGMPQNVWKLSLRELRRLKKMQPQQPGYSSSRAYLELLADLPWQKASKELELDLRAAQERLDNDHYGLEKVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIAAALDRKFVRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKKVAVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQPIPPPLLDRMEVIELPGYTPEEKLKIAMKHLIPRVLDQHGLSSEFLQIPKAMVQLVIQRYTREAGVRSLERSLAALARAAAVRVAEQEQVVPLSKGVEGLTTPLLENRLVDSAEVEMEVIPMGVNNRDISNTFRITSPLVVDEAMVEKVLGPPKFDGRETAERVVTPGISVGLVWTSVGGEVQFVEASTMVGKGELHLTGQLGDVIKESAQIALTWVRARATDLKLAAAESISLLEGRDIHIHFPAGAVPKDGPSAGVTLVTALVSLFSQRKVRSDTAMTGEMTLRGLVLPVGGIKDKILAAHRYGIKRVILPERNLKDLVEVPPSVLANLEILLAKRMEDVLEHAFDSGCPWRQHSKL* 884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0484 883 Pfam ATPase family associated with various cellular activities (AAA) 400 537 IPR003959 GO:0005524|GO:0016887
Mtr5g0484 883 ProSitePatterns ATP-dependent serine proteases, lon family, serine active site. 776 784 IPR008268 GO:0004176|GO:0004252|GO:0006508
Mtr5g0484 883 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 404 423 - -
Mtr5g0484 883 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 691 707 - -
Mtr5g0484 883 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 773 792 - -
Mtr5g0484 883 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 803 822 - -
Mtr5g0484 883 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 826 844 - -
Mtr5g0484 883 Gene3D - 169 292 - -
Mtr5g0484 883 Gene3D - 361 539 IPR027417 -
Mtr5g0484 883 SMART AAA_5 396 541 IPR003593 -
Mtr5g0484 883 SMART lon_5 10 249 IPR003111 -
Mtr5g0484 883 SUPERFAMILY PUA domain-like 10 248 IPR015947 -
Mtr5g0484 883 PANTHER ATP DEPENDENT LON PROTEASE FAMILY MEMBER 1 883 IPR027065 GO:0004176|GO:0004252|GO:0005524|GO:0030163
Mtr5g0484 883 Gene3D - 2 157 IPR046336 -
Mtr5g0484 883 ProSiteProfiles Lon proteolytic domain profile. 688 873 IPR008269 GO:0004176|GO:0004252|GO:0006508
Mtr5g0484 883 Hamap Lon protease homolog 2, peroxisomal [LONP2]. 3 883 IPR027501 GO:0004252|GO:0006515
Mtr5g0484 883 ProSiteProfiles Lon N-terminal domain profile. 11 249 IPR003111 -
Mtr5g0484 883 PANTHER LON PROTEASE HOMOLOG 2, PEROXISOMAL 1 883 - -
Mtr5g0484 883 Gene3D - 540 679 - -
Mtr5g0484 883 Pfam Lon protease (S16) C-terminal proteolytic domain 665 871 IPR008269 GO:0004176|GO:0004252|GO:0006508
Mtr5g0484 883 Coils Coil 284 304 - -
Mtr5g0484 883 TIGRFAM lon: endopeptidase La 13 871 IPR004815 GO:0004176|GO:0005524|GO:0006508
Mtr5g0484 883 Gene3D - 690 877 IPR014721 -
Mtr5g0484 883 MobiDBLite consensus disorder prediction 66 93 - -
Mtr5g0484 883 SUPERFAMILY Ribosomal protein S5 domain 2-like 691 871 IPR020568 -
Mtr5g0484 883 PIRSF Lon_proteas 641 874 IPR004815 GO:0004176|GO:0005524|GO:0006508
Mtr5g0484 883 PIRSF Lon_proteas 1 630 IPR004815 GO:0004176|GO:0005524|GO:0006508
Mtr5g0484 883 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 348 614 IPR027417 -
Mtr5g0484 883 Gene3D - 300 348 - -
Mtr5g0484 883 CDD AAA 381 542 - -
Mtr5g0484 883 Pfam ATP-dependent protease La (LON) substrate-binding domain 11 249 IPR003111 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0484 Mtr-Chr5 4506667 4516351 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0484 K01338 - gmx:100796650 1514.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0484 5 4506667 4516351 Mtr5g0484 5 4506667 4516351 ECH