LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mtr5g0477	ATGGCTCAAACACTTCGTTTTTCAATTTCCTTGATTAATCAGAAAGAAACAAGAGTCTTAAAATCTCTTGATGATTTTTTTTCCAACAAAGTTTCTTGTCCAAAAATGAAACCATCTATTGGTCACAAACTCAAAGCAAAGAGTTCAATACAAGAAACTCATTTCACAACAGACAACAACAATTCTGCTGTAAAGAAAGACAAGAAATGGGAGAAGATTCACACGTCATCGGTCACTCATAACCACGATGGTGATTCGAATAGAGTACCGGTGTTTGTGATGTTGCCATTAGACACGGTAACAATGGGAGGAAAATTGAATAAAGCAAGAGCAATGAATGCTAGTTTGATGGCTTTGAAGAGTGCTGGTGTTGAAGGAGTAATGGTTGATGCTTGGTGGGGTTTGGTCGAAAAAGATGGTCCAATGAAGTATAATTGGGAAGCTTATGCTGAACTTGTTCAGATGGTACAAAAACATGGTTTGAAGCTTCAAATTGTTATGTCTTTTCATCAATGTGGTGGAAATGTTGGTGACTCTTGCAGCATTCCTCTACCACCATGGGTGCTAGAAGAAATCAGGAAGAACCCTGAGTTGGTTTACACAGACAAATTAGGAAGAAGAAATCCAGAATACATCTCATTGGGATGTGATTCAGTGCCTGTTCTAGCAGGAAGAACTCCACTTCAAGTCTACTCCGATTATATGAGAAGCTTCCGTGATAGGTTCACAGATTATTTGGGCAATGTTATCATAGAAATTCAAGTGGGGCTAGGTCCATGTGGGGAGTTGAGATATCCATCATACCCTGAAACTGATGGAACTTGGAAGTTTCCAGGAATTGGAGAATTCCAGTGCTATGACAAGTATATGAGATCATCCTTGGAAGCAACAGCAGGAGCAATTGGGAAGAAAGAGTGGGGAACAAGTGGACCCCATGACTCAGGACAATACAATCAATTTCCTGAGGATACTGGATTTTTCAAAAGAGAAGGAACATGGAACACAGAATATGGAGATTTCTTCCTTGATTGGTACTCAAGCAAGCTTGTTGAACATGGTGAGAAAATTCTTGTATCAGCTAAAAGCATATTCCAAACAAGTGGAGTGAAACTATCTGCCAAAATAGCTGGAATTCATTGGCATTACAATGCAAGATCACATGCAACTGAATTAACTGCAGGTTACTATAACACAAAGTTTCATGATGGTTATATACCAATAGCACAAATGCTAGCAAAACATGGAGTTATATTGAATTTCACATGCATGGAAATGAAGGATAATGAACAACCTTGTGATGCAAATTGTTCACCAGAAGGATTGGTAAATCAAGTGAGAATGGCAACAAAGATTGCAGGTGGTGAACTTGCTGGTGAGAATGCTTTGGAGAGATATGATTCAAGTGCTTATGGTCAAGTTTTGTCAACAAGTGGATTAAGTGCTTTTACATATCTAAGAATAAATAAGAGGTTGCTTGAGGGTGATAATTGGAGGAAATTTGTGGATTTTGTTGTGAGTATGTCTGATGGTGGTAAACTAAGGCTTGCTGAATCTGATTCATATGGGACTGATCTTTATGTTGGACACATAATTAAGGAAAATGATGTTATAATAGAGGTTGCTCTTGTGTGA	1632	0.3836	MAQTLRFSISLINQKETRVLKSLDDFFSNKVSCPKMKPSIGHKLKAKSSIQETHFTTDNNNSAVKKDKKWEKIHTSSVTHNHDGDSNRVPVFVMLPLDTVTMGGKLNKARAMNASLMALKSAGVEGVMVDAWWGLVEKDGPMKYNWEAYAELVQMVQKHGLKLQIVMSFHQCGGNVGDSCSIPLPPWVLEEIRKNPELVYTDKLGRRNPEYISLGCDSVPVLAGRTPLQVYSDYMRSFRDRFTDYLGNVIIEIQVGLGPCGELRYPSYPETDGTWKFPGIGEFQCYDKYMRSSLEATAGAIGKKEWGTSGPHDSGQYNQFPEDTGFFKREGTWNTEYGDFFLDWYSSKLVEHGEKILVSAKSIFQTSGVKLSAKIAGIHWHYNARSHATELTAGYYNTKFHDGYIPIAQMLAKHGVILNFTCMEMKDNEQPCDANCSPEGLVNQVRMATKIAGGELAGENALERYDSSAYGQVLSTSGLSAFTYLRINKRLLEGDNWRKFVDFVVSMSDGGKLRLAESDSYGTDLYVGHIIKENDVIIEVALV*	544

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mtr5g0477	543	Gene3D	Glycosidases	81	535	-	-
	Mtr5g0477	543	ProSitePatterns	Beta-amylase active site 1.	170	178	IPR018238	GO:0000272\|GO:0016161
	Mtr5g0477	543	Pfam	Glycosyl hydrolase family 14	92	503	IPR001554	GO:0000272\|GO:0016161
	Mtr5g0477	543	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	123	137	IPR001554	GO:0000272\|GO:0016161
	Mtr5g0477	543	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	144	162	IPR001554	GO:0000272\|GO:0016161
	Mtr5g0477	543	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	166	187	IPR001554	GO:0000272\|GO:0016161
	Mtr5g0477	543	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	258	280	IPR001554	GO:0000272\|GO:0016161
	Mtr5g0477	543	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	333	352	IPR001554	GO:0000272\|GO:0016161
	Mtr5g0477	543	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	369	385	IPR001554	GO:0000272\|GO:0016161
	Mtr5g0477	543	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	386	397	IPR001554	GO:0000272\|GO:0016161
	Mtr5g0477	543	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	404	427	IPR001554	GO:0000272\|GO:0016161
	Mtr5g0477	543	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	441	463	IPR001554	GO:0000272\|GO:0016161
	Mtr5g0477	543	SUPERFAMILY	(Trans)glycosidases	87	511	IPR017853	-
	Mtr5g0477	543	PANTHER	-	1	543	IPR001554	GO:0000272\|GO:0016161
	Mtr5g0477	543	PANTHER	BETA-AMYLASE	1	543	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mtr5g0477	Mtr-Chr5	4367805	4370768	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mtr5g0477	1	543	Glycoside Hydrolase	AT4G17090	68.412	0.0	786

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mtr5g0477	K01177		-	gmx:100818063	849.351

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Mtr5g0477	5	4367805	4370768	Mtr5g0477	5	4367805	4370768	ECH