Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0473 ATGGGTTGTTACCACTCTAGAGGAAGAATATTTCCAGAGGAGGAGGACCCAATAATTCTTGCATCAGAAACAGCCTTCGGTGTTAATGACATTGAAGCATTATTTGAGCTTTTTAAGAGCATCAGTGGGTCGGTCATTAATGATGGACTAATAAGCAAGGAAGAATTTCAATTGGCGATTTTCAATAATAAAACAAAGGAGAATCTCTTCACAAGTCGGGTCTTTGTTCTATTTGATGTGAAGAGAAAGGGAGTAATTGACTTTGGGGACTTTGTGAGAGCACTGAATGTCTTCCACCCTAATGCACCACAAGAAGTCAAGATAGATTTTTTGTATTTTCTTGCAATTTCTTTTAGGCTCTATGATATGAACAATACAGGTTTTATAGAGCGCGATGATGTGAAACAAATGATAGATGCGCTTCTATGTGAATTTGAAATTAAGTTGAGTGATGACATGATCGAAACAATTATTCAGAAGACTCTCTTGGATGCTGATCCAAACCAAGACGGGAAGATAGACAAATTCGAGTGGAAAAATTTTGTTTCTCAAAATCCGTCATTGTTGAAAATCATGACCCTACCATATCTAAGGGATATTACAACAATTTTTCCCAGTTTTGTATTTAACTCAAAGGTGGATGATGACATTGCTACTTGA 660 0.3652 MGCYHSRGRIFPEEEDPIILASETAFGVNDIEALFELFKSISGSVINDGLISKEEFQLAIFNNKTKENLFTSRVFVLFDVKRKGVIDFGDFVRALNVFHPNAPQEVKIDFLYFLAISFRLYDMNNTGFIERDDVKQMIDALLCEFEIKLSDDMIETIIQKTLLDADPNQDGKIDKFEWKNFVSQNPSLLKIMTLPYLRDITTIFPSFVFNSKVDDDIAT* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0473 219 SMART efh_1 157 185 IPR002048 GO:0005509
Mtr5g0473 219 SMART efh_1 113 141 IPR002048 GO:0005509
Mtr5g0473 219 SMART efh_1 70 98 IPR002048 GO:0005509
Mtr5g0473 219 ProSiteProfiles EF-hand calcium-binding domain profile. 153 188 IPR002048 GO:0005509
Mtr5g0473 219 ProSiteProfiles EF-hand calcium-binding domain profile. 118 144 IPR002048 GO:0005509
Mtr5g0473 219 SUPERFAMILY EF-hand 22 208 IPR011992 -
Mtr5g0473 219 Gene3D - 17 216 - -
Mtr5g0473 219 CDD EFh 118 183 IPR002048 GO:0005509
Mtr5g0473 219 ProSitePatterns EF-hand calcium-binding domain. 122 134 IPR018247 -
Mtr5g0473 219 PANTHER CALCINEURIN B 1 219 IPR045198 GO:0005509|GO:0019722|GO:0019900
Mtr5g0473 219 Pfam EF hand 158 182 IPR002048 GO:0005509
Mtr5g0473 219 ProSitePatterns EF-hand calcium-binding domain. 166 178 IPR018247 -
Mtr5g0473 219 ProSiteProfiles EF-hand calcium-binding domain profile. 66 101 IPR002048 GO:0005509
Mtr5g0473 219 PANTHER CALCINEURIN B-LIKE PROTEIN 1 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0473 Mtr-Chr5 4333047 4336213 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0473 1 219 EF-hand Containing Proteins AT4G17615 68.182 2.48e-105 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0473 K06268 - gmx:100779020 325.094
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0473 5 4333047 4336213 Mtr5g0473 5 4333047 4336213 ECH
Mtr5g0473 5 4333047 4336213 Mtr4g3531 4 49038936 49043046 PCT