Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0409 ATGAGTACTCCAACAGCGAAAGGCGAAGACAGAGATATTGTTATAACAAGAAGTGATAGAAAAAATGCATCGTCTTCTGGTGTTAAGGGATTGAGGACCAAATCAATTCATCCTCCTATTGAAATGCATTGGGATCTCCCTACTACACAAAAAGGAAAGAAAAAGGCTTCACTCTCCATCAAGTCATTGTTGTCTTACCCACTCATGAAATTTGGAAGGAGTAAAAGTTTGGAAATGGTTCTAGAAGGAACTCATGATCCAAATGATGAGCAAATTGTTGAGGCTTTTCGCGAAATGCTTTCACGTGAGGGTCTATTACCACCTAAACACAATGATTATCATACTCTTCTAAGGTTTCTGCGGATGAATGATTTTGATATGACGATATCCAAAGATATGTTTCTCAATTATCTGAAATGGCGAAAGGAATTTCGAGTCGACATGATTCATAAGGAATTCAAATTCACAGAATACACAGAAGTGAAAAAATGTTATCCCCATGGATACCATGGAGTTGATAAATGTGGCAGACCTGTGTATATTGAGAGAATTGGGATGATAGATATTAACAAACTGTGGCAAATAACCACACAAGAAAGGCTTATCAAGCATCATGTGTCAGAACAAGAGAAAACACTAAGAGGAATGTCTAATTTCTCAAAGCCTGCAAGGTACATCTTCATGGAAATTCAGAAGATTGATAGCAGTTATTATCCTGAGACTCTAAATAAACTCTTTATTATTAATGCTGGTTCTGGCTTTAAGATGTTGTGGAAAGCAGTGAAGGCATTCCTAAGTGAACGCACAGTAGCAAAAATTCAAGTTTTGGGTTCTAATTATCTCAGTGTGTTGCTAGAGGCTATTGATCCGAGTAACTTGCCAACATTTTTGGGTGGTAATTGCACATGTTCTGAATATGGAGGTTGCTTGATGAGTGATCAAGGCCCCTGGAAAAATTCAGAATTGTTAGAAATGATTCAGACAACGGAAGAGATGGATGGTGCGTGCGAACACAACAATGTGGTTTCAGAAGGATCATTGATGTCCAAAACGGTTGAAATGCAAAACAAAGATGATCTAAGTATGAGTTTGGCACTTGAGGAAACAACAAGGGCTAGAACAAGCTTGTCATGTAGGTTAGCATTACAAAAAATTGATTGGCTTGAAGCTAGTCTTGGAGATATCAAGAATCAGAAAATAAAGACATTAGAAGATGCACTTCAAGACACCAAGATGGCATTGAAAGAACTTGCACAACATATAGAACAGTAA 1272 0.3758 MSTPTAKGEDRDIVITRSDRKNASSSGVKGLRTKSIHPPIEMHWDLPTTQKGKKKASLSIKSLLSYPLMKFGRSKSLEMVLEGTHDPNDEQIVEAFREMLSREGLLPPKHNDYHTLLRFLRMNDFDMTISKDMFLNYLKWRKEFRVDMIHKEFKFTEYTEVKKCYPHGYHGVDKCGRPVYIERIGMIDINKLWQITTQERLIKHHVSEQEKTLRGMSNFSKPARYIFMEIQKIDSSYYPETLNKLFIINAGSGFKMLWKAVKAFLSERTVAKIQVLGSNYLSVLLEAIDPSNLPTFLGGNCTCSEYGGCLMSDQGPWKNSELLEMIQTTEEMDGACEHNNVVSEGSLMSKTVEMQNKDDLSMSLALEETTRARTSLSCRLALQKIDWLEASLGDIKNQKIKTLEDALQDTKMALKELAQHIEQ* 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0409 423 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 157 305 IPR001251 -
Mtr5g0409 423 SUPERFAMILY CRAL/TRIO domain 157 326 IPR036865 -
Mtr5g0409 423 SUPERFAMILY CRAL/TRIO N-terminal domain 83 152 IPR036273 -
Mtr5g0409 423 PANTHER PHOSPHATIDYLINOSITOL/PHOSPHATIDYLCHOLINE TRANSFER PROTEIN SFH11 30 214 - -
Mtr5g0409 423 PANTHER PHOSPHATIDYLINOSITOL/PHOSPHATIDYLCHOLINE TRANSFER PROTEIN SFH11 215 422 - -
Mtr5g0409 423 PRINTS Cellular retinaldehyde-binding protein signature 115 137 - -
Mtr5g0409 423 PRINTS Cellular retinaldehyde-binding protein signature 258 277 - -
Mtr5g0409 423 PRINTS Cellular retinaldehyde-binding protein signature 291 300 - -
Mtr5g0409 423 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 30 214 - -
Mtr5g0409 423 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 215 422 - -
Mtr5g0409 423 Gene3D - 146 337 IPR036865 -
Mtr5g0409 423 Gene3D - 68 144 - -
Mtr5g0409 423 CDD SEC14 158 300 IPR001251 -
Mtr5g0409 423 Coils Coil 400 420 - -
Mtr5g0409 423 Pfam CRAL/TRIO domain 216 299 IPR001251 -
Mtr5g0409 423 SMART CRAL_TRIO_N_2 112 137 IPR011074 -
Mtr5g0409 423 SMART sec14_4 157 302 IPR001251 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0409 Mtr-Chr5 3746961 3750195 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0409 90 296 Acyl Lipid Metabolism Gene Families AT5G47730 25.847 1.39e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0409 - - gmx:100807344 582.022
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0409 5 3746961 3750195 Mtr5g0409 5 3746961 3750195 ECH