Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0332 ATGGCACCAGCAGCAGCAAACAACGTTGGAATTCTTGCTCTTGACATCTACTTCCCTCCTAACTGCGTTCAACAGGAAGCATTGGAGGCTCATGATGGTGCTAGTAAAGGGAAATATACAATTGGACTTGGACAAGATTGCATGTCATTTTGCTCTGATGTTGAAGATGTCATCTCAATGAGTTTGACAGTGGTTTCTACACTTCTTCAGAAGTATGAGATCGATCCTAAACAGATAGGTCGTCTTGAAGTAGGCAGTGAAACTGTTATCGACAAAAGCAAATCCATCAAGTCATTCTTGATGCAGATATTTGAGAAATATGGAAATACTGACATTGAAGGTGTTGATTCAACTAATGCTTGCTATGGAGGAACTGCCGCTTTGTTCAATTGTGTCAATTGGGTGGAGAGCAATTCATGGGATGGACGTTATGGACTTGTCGTCTGCACTGACAGCGCAGTCTATGCTGAAGGTCCTGCTCGACCTACCGGAGGAGCTGCTGCTATTGCTATGCTAATTGGTCCTGATGCCCCTATTTCTTTTGAAAGCAAATTGAGGGGAAGTCATATGGCTCATGTTTATGATTTTTACAAACCTGACCTTGCTAGTGAATATCCGGTTGTCGACGGAAAGCTTTCACAAACATGTTACCTCATGGCTCTTGATACTTGCTTTAAAAATTTCTGTCAAAAATACGAGAAACACGAGGGAAAACAATTCTCTCTTTCTGATGCTGACTATTTTGTATTCCACTCTCCTTATAACAAGCTTGTGCAAAAAAGTTTTGCTCGTTTGGTCTTCAGTGACTTCTTGAGGAATCCCAGCTCTAAGGATGAGGTTACCAACGAAAAGCTTGGACCTTTTACAACTTTATCCGATGACGAGAGCTACCAAAGCCGGGATCTTGAAAAGGCATCGCAACAAGTTGCAAAGCCTCTATATGATGAGAAGGTACAACCATCTACTTTGATACCAAAGCAAGTTGGTAACATGTACACCGCGTCCATCTATGCAGCATTTGCATCCCTTCTTCACAACAAAAATAGTTCACTGGAAGGTAAGAGGGTGATATTATTCTCATACGGAAGTGGCTTAACTGCCACAATGTTTTCCTTGCAATTACGTGAAACTAAACATCCATTTAGTTTGTCAAACATTGCCCGAGTGATGGATGTTGCTGAAAAGTTGAAGTCAAGACATGAGTTTCCTCCACAGAAGTTCATTGAAACACTGAAGCTTATGGAACATAGGTATGGTGCCAAGGATTATGTAACAAGCAAGGACAGTAGCCTTTTGGCTCCAGGCACATTCTATCTCACCGAAGTTGATACCATGTATCGTAGATTCTATACAACGAAATCTAGTGAAAGCAATTTGACCCCTGCAGTTAACGGTTTGTCTGTCAATGGTCACTGA 1416 0.416 MAPAAANNVGILALDIYFPPNCVQQEALEAHDGASKGKYTIGLGQDCMSFCSDVEDVISMSLTVVSTLLQKYEIDPKQIGRLEVGSETVIDKSKSIKSFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESNSWDGRYGLVVCTDSAVYAEGPARPTGGAAAIAMLIGPDAPISFESKLRGSHMAHVYDFYKPDLASEYPVVDGKLSQTCYLMALDTCFKNFCQKYEKHEGKQFSLSDADYFVFHSPYNKLVQKSFARLVFSDFLRNPSSKDEVTNEKLGPFTTLSDDESYQSRDLEKASQQVAKPLYDEKVQPSTLIPKQVGNMYTASIYAAFASLLHNKNSSLEGKRVILFSYGSGLTATMFSLQLRETKHPFSLSNIARVMDVAEKLKSRHEFPPQKFIETLKLMEHRYGAKDYVTSKDSSLLAPGTFYLTEVDTMYRRFYTTKSSESNLTPAVNGLSVNGH* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0332 471 ProSitePatterns Hydroxymethylglutaryl-coenzyme A synthase active site. 109 124 IPR000590 GO:0004421|GO:0008299
Mtr5g0332 471 Gene3D - 5 455 IPR016039 GO:0016746
Mtr5g0332 471 CDD init_cond_enzymes 8 372 - -
Mtr5g0332 471 Pfam Hydroxymethylglutaryl-coenzyme A synthase C terminal 179 453 IPR013746 GO:0004421|GO:0006084|GO:0010142
Mtr5g0332 471 TIGRFAM HMG-CoA-S_euk: hydroxymethylglutaryl-CoA synthase 6 452 IPR010122 GO:0004421|GO:0008299
Mtr5g0332 471 SUPERFAMILY Thiolase-like 180 451 IPR016039 GO:0016746
Mtr5g0332 471 SUPERFAMILY Thiolase-like 8 176 IPR016039 GO:0016746
Mtr5g0332 471 PANTHER 3-HYDROXY-3-METHYLGLUTARYL COENZYME A SYNTHASE 6 453 - -
Mtr5g0332 471 Pfam Hydroxymethylglutaryl-coenzyme A synthase N terminal 7 178 IPR013528 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0332 Mtr-Chr5 3120096 3124495 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0332 K01641 - gmx:100782595 838.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0332 5 3120096 3124495 Mtr5g0332 5 3120096 3124495 ECH