Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0329 ATGGATGATGAAGACCTGGCTACAGTGCACAAAGTGCCATCTGCTCTCATAAAAGCGATAAAGTTTGAGGTTTTAACTGGAGAAGATATAGAGAAGATCTCAGCCTTGGAGATAAATGCACCCGGACAAGTCACCTGTTCTGATCTGGGACTTCCAAATTCTTCTTATGGGTGCACGACATGTGGTTCAAAAGATAGAAAGTCCTGTGAAGGTCATTTTGGAGCAATCAAATTTCCTTTTACCATATTACATCCATACTTCATGGCAGAGATTGCAGAAATCTTGCAAAAGATTTGCCCTGCATGTAAATCTATTCGACAAGAAATACGTGTTAAGCGTGCTAAATCACTCCTTGGATACAATAATCAGCCCAAAGGTTGCAAATATTGCTGTGGAAATGGTATGGGTCGTTATCCTGCCATGAAATTCAGAGTTTCATCCAATGATTTCTTCAGGAGAACTGCAATCATTGTTGAAGTAAATGATATATCTTTAAATAAGAAAAGAAATTTGGGGCGAGGATTGCCCGCTGATTATTGGGACTTTATCCTTGGAGATGTTCAACAAGAAGAAAATCATGTAAATAGAAAGGTTTTATCACCCGTTCAGGTTGAGAATTTATTGAGTGGTGTTGATCCGAACTTCATTGAAAAGTTTATTCCAAGTATGGATTTGGTTGGTCTCAGTTGCTTCCTGGTGGCACCGAATTGTCATCGTGTGACAGAAGTCCCTCATCGACTTTCGGGGGGGTATCCATTGAGTTTCGATAATAGAACCAGGGCTTGCAAGAAATTGGTTGATTTCAGGGGTACAGCAAATGAGTTAAGTTCTCGTGTTTTGGATTGCCTGAGATTTTCCAAGATAAATCCCGACAGAACGCCAGTTAATATTTTTACTGAGTTGCAACAAAGAAAAGTTGGAGAAAATGCTTGCAATTCGTCTGGTTTAAGATGGATGAAAGACGTCGTTCTTGGAAAACGGAACGACTGTACGTTCCGTACCGTGGTTGTTGGTGATCCAGACCTCGAGCTTAGTGAAATTGGTATACCCTGTCAAATTGCAGAAGCTTTGCAGGTTTCTGAGTATGTCAATCGGCAGAACAGGCAAAATTTGCTTTATTGTTGTGAGCTGCGTTTGTTAGAGAAGGGGCAGATAAATGTTCGCAGAAACGGTAATCCAGTAGTTTTGTATAAAAAAGAAGATTTGCAGATAGGAGACATATTTTATCGGCCTCTTGTTGATGGGGACAAAGTGTTGATAAATAGGCCTCCTTCCATACATCAACACTCGATGATTGCTCTCACAGTTAGGGTTCTTCCAATATCTTCTGTAGTATCTATTAACCCAATCTGCTGCTCACCTCTGCGCGGGGATTTTGATGGTGACTGCCTTCACGGGTATATTCCACAATCTGTTGGTGCAAGAGTGGAGCTTAATGAGCTGGTTGCTTTGGACAGGCAACTGATTAATGGGCAAAGTGGTGGAAATTTGCTTTCACTTTCCCAGGATAGTTTAACTGCTGCACATTTGCTGTTGGAAGATGGTGTAGGTTTTAATATTTACCAAGTGCAGCAGCTTGAAATGCTCTGCAATAAAGAATTAACATCTCCTGCAATTTTTAAAGCTCCTTCAAGTAATACCCCGTTTTGGAGTGGCAAACAATTGTTCAGCATGCTTTTGCCTTCTAAATTTGACTATGCCTTTCCTTCAAATGATGTTTTTGTTAAAGATGGGGAGCTGATATCTTGTTCTGAATCTTCTGGGTGGTTACGTGATTCAGAGAACAATGTTTTCCAGAGTCTTGTGGAACATTTTCAAGGGAAGATATTGGACGTATTGCATGGTGCACAGAAAGCTCTTTGTGAGTGGCTGTCTATGACAGGGTTTAGTGTTTCCCTCTCAGATCTGTACCTTTCTTCTGATTCCTATGCGCGGAAAAACATGATGGAGGAAATCTCCTATGGCTTACGAGTAGCAGAACAGGCTTGTGATTTCAACCAGTTATTGGTAGATCATTACTCTGATTTTCTTTCAGCAAGTCCAGAAGAGAATGAAAAATTTGTGACTGTTGATGTGGATCGTCTGAATCATGAAAGGCAAATATCTGCTGCTCAAAGTCAAGCGTCGGTTGATGCTTTTAGACATGTTTTCCGCAATATTCAGAGTTTAGCTGATAAGCATGCGTGCAAGGACAATTCTTTCCTTGCTATGTTTAAGGCTGGAAGCAAGGGTAATTTACTGAAATTAGTGCAACATTCCATGTGCCTTGGACTGCAACATTCTCTGGTTCGCTTGTCATACAGAATTCCCCGTGAACTTTCATGTGCTGGTTGGAACAGTCAAAAGGGACTTCATTCAATGGAGATGTCTTCAGATACTCTTGAACCAAAACAGTCTTACATTGCTCATGCCGTGGTTGAAAGCTCTTTTCTTACTGGGTTGAATCCACTCGAATGTTTTGTTCATTCAGTGACAAACCGTGATAGCTCTTTCAGTGACAACGCAGACCTTCCCGGGACATTGACCCGTAGACTTATGTTCTTCATGCGTGATATGTATGATGCGTATGATGGAACAGTGAGAAACTTATATGGCAATCAACTTATACAGTTTTCTTATGATGCTGAAGAGGATTCATCTTGTGATAGCTATTTTCGAGAGGATATTATAGGTGGCGAGCCAGTTGGAGCGCTTTCTGCCTGTGCGGTTTCTGAGGCTGCATACAGTGCTTTGAGTCAACCTATTAGTCTACTTGAAGCATCACCGTTGCTGAACTTAAAAAATGTTCTAGAGTGTGGTTCAAGGAAAAAAGGTGGTGATCAGACCGTGTCTTTATTTTTGTCTGAGAAAATTGGTAAACAAAGAAATGGGTTTGAGTATGCAGCACTAGAAGTTAAGAATTATTTGGAAAGATATATGTTCTCAAACATTGTTTCTACTGTCATGATAATATTCACCCCACAGCATTGCAGTCAAGTCAAATACAGTCCTTGGGTTTGCCATTTTCATTTAGACAAGGAAAATGTAACAAGAAGAAAATTAGAAGTGCATTCTATCATTGACTCTCTTTACCAACAATATGACTCCTTCAGAAGAGAGTCAAAAGTCATTCTTCCCAGTTTGAAAATATCAAGCAACAGGAAATGGTGCGTAGATTACAAGGCTAATGAAGGTGGAGAAACCTCTGTTGGTAATGAAAAAGACGGTGAAGATTGCATCACTGTTGCAGTTGTCGAAGACTCTAAGAATTCTGTACAACTGGACTCTGTTCGGAAGAGTCTGATACCTTTCCTTCTGCAAACAGCTATAAAAGGATTTTTGGAGATCAAGAAGGTTGACATTCTCTGGAAGGATCTGCCAAAAGTAACGAAATCTTATAATGGTTCTGCTGGTGAACTATACTTGAGGGTTACTATGTCCAGTGGCAATGACAATGGTACATTCTGGGGTAGGCTGATAAATCACTGCCACAGAATAATGCCGTTGATTGACTGGACACGAAGTCATCCCGATAATATTCATCATTTCTGCTCAGCCTTTGGAATCGATGCAGGGTGGCAGCATTATTTCCATAATTTGTCATCTGCAACTTCTGATACTGGCAAGTCAATCCTTCCTAAGCATCTGCGTCTTGTTGCCAATAGTCTTTCAGCTAGTGGAGAGTTTGTGGGATTAAATGCTAAAGGAATGGCACGGCAAAGAAAACATGCATCCGTTTCATCACCCTTCGTGCAAGCATGCTTTTCTAATCCTGGTAGTTCCTTTTTAAAAGCTGCGAAGTCTGGAATTGTGGATAATCTCCAGGGCAATCTAGATGCATTGGCTTGGGGAAACTGTCTGCCCATGGGGACAGGTGGACAGTTTGATATCATATACTCAGAGAAGGTAGAGGAGATTAATAAGTCTGTAGATGTGTATGGCCTGCTAGAAACCAGTTTTAACCAGATGGACCAAGAGATTAATATCCCTCAATCTCGCAAATATTCATCTGGAAAATGCAGTTCAGATTTTAGGTCTAAAAATGGGGGTTACACCCCAAAAGAGCCTAAGCAGTGGAAAAGTGTTTTAAGAAATTTCATGACTGCAAATGATATTCAGAGGCTTACTTTTGATGCAAGGGTCATACTGAACAAGTATCAGATTGATGAGACACTAAGTGAGACGGACAAGTTAACAATAATGAAGGTTTTGCATTTTCATCCTCGTAGAGACGAGAAGTTTGGCTCTGGACCACAAAACATAAAGGTTGGATGGCATCCTGAGTTTACAGACAGCCGTTGCTTTTTTATAATACGAAAGGATGGGTCTGTTGAAGATTTTTCATACCGCAAATGCATTCTTGGTGCTCTTGATATTATTGATCCGAAAAAGTCAAAGATCCAAAGGAACAGATGGTCGGGAAATGGTGATATGGAAGCTAAAAAATGGTCGGGAAATGGTGATATGGAAGCTAAAAAATGGTCGGGAAGTTATGACAAGGAAGCTAAAAAATGGTCACAAAGTTATGACAAGGAAGCTAAGAAATGGTCAGGAAATGATGATGTGGAAGTGACTAGCATCTGA 4563 0.4052 MDDEDLATVHKVPSALIKAIKFEVLTGEDIEKISALEINAPGQVTCSDLGLPNSSYGCTTCGSKDRKSCEGHFGAIKFPFTILHPYFMAEIAEILQKICPACKSIRQEIRVKRAKSLLGYNNQPKGCKYCCGNGMGRYPAMKFRVSSNDFFRRTAIIVEVNDISLNKKRNLGRGLPADYWDFILGDVQQEENHVNRKVLSPVQVENLLSGVDPNFIEKFIPSMDLVGLSCFLVAPNCHRVTEVPHRLSGGYPLSFDNRTRACKKLVDFRGTANELSSRVLDCLRFSKINPDRTPVNIFTELQQRKVGENACNSSGLRWMKDVVLGKRNDCTFRTVVVGDPDLELSEIGIPCQIAEALQVSEYVNRQNRQNLLYCCELRLLEKGQINVRRNGNPVVLYKKEDLQIGDIFYRPLVDGDKVLINRPPSIHQHSMIALTVRVLPISSVVSINPICCSPLRGDFDGDCLHGYIPQSVGARVELNELVALDRQLINGQSGGNLLSLSQDSLTAAHLLLEDGVGFNIYQVQQLEMLCNKELTSPAIFKAPSSNTPFWSGKQLFSMLLPSKFDYAFPSNDVFVKDGELISCSESSGWLRDSENNVFQSLVEHFQGKILDVLHGAQKALCEWLSMTGFSVSLSDLYLSSDSYARKNMMEEISYGLRVAEQACDFNQLLVDHYSDFLSASPEENEKFVTVDVDRLNHERQISAAQSQASVDAFRHVFRNIQSLADKHACKDNSFLAMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRIPRELSCAGWNSQKGLHSMEMSSDTLEPKQSYIAHAVVESSFLTGLNPLECFVHSVTNRDSSFSDNADLPGTLTRRLMFFMRDMYDAYDGTVRNLYGNQLIQFSYDAEEDSSCDSYFREDIIGGEPVGALSACAVSEAAYSALSQPISLLEASPLLNLKNVLECGSRKKGGDQTVSLFLSEKIGKQRNGFEYAALEVKNYLERYMFSNIVSTVMIIFTPQHCSQVKYSPWVCHFHLDKENVTRRKLEVHSIIDSLYQQYDSFRRESKVILPSLKISSNRKWCVDYKANEGGETSVGNEKDGEDCITVAVVEDSKNSVQLDSVRKSLIPFLLQTAIKGFLEIKKVDILWKDLPKVTKSYNGSAGELYLRVTMSSGNDNGTFWGRLINHCHRIMPLIDWTRSHPDNIHHFCSAFGIDAGWQHYFHNLSSATSDTGKSILPKHLRLVANSLSASGEFVGLNAKGMARQRKHASVSSPFVQACFSNPGSSFLKAAKSGIVDNLQGNLDALAWGNCLPMGTGGQFDIIYSEKVEEINKSVDVYGLLETSFNQMDQEINIPQSRKYSSGKCSSDFRSKNGGYTPKEPKQWKSVLRNFMTANDIQRLTFDARVILNKYQIDETLSETDKLTIMKVLHFHPRRDEKFGSGPQNIKVGWHPEFTDSRCFFIIRKDGSVEDFSYRKCILGALDIIDPKKSKIQRNRWSGNGDMEAKKWSGNGDMEAKKWSGSYDKEAKKWSQSYDKEAKKWSGNDDVEVTSI* 1521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0329 1520 Pfam RNA polymerase Rpb1, domain 2 325 482 IPR000722 GO:0003677|GO:0003899|GO:0006351
Mtr5g0329 1520 SMART rpolaneu7 224 512 IPR006592 GO:0003677|GO:0003899|GO:0006351
Mtr5g0329 1520 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 11 1292 - -
Mtr5g0329 1520 Gene3D RNA polymerase II, clamp domain 7 123 IPR044893 -
Mtr5g0329 1520 Gene3D RNA polymerase ii 358 410 - -
Mtr5g0329 1520 Pfam RNA polymerase Rpb1, domain 1 17 108 IPR007080 GO:0003677|GO:0003899|GO:0006351
Mtr5g0329 1520 Gene3D - 321 491 - -
Mtr5g0329 1520 MobiDBLite consensus disorder prediction 1470 1493 - -
Mtr5g0329 1520 Pfam Protein of unknown function (DUF3223) 1375 1446 - -
Mtr5g0329 1520 Gene3D - 662 814 IPR038120 -
Mtr5g0329 1520 PANTHER DNA-DIRECTED RNA POLYMERASE IV SUBUNIT 1 4 1370 - -
Mtr5g0329 1520 Pfam RNA polymerase Rpb1, domain 4 709 762 IPR007083 GO:0003677|GO:0003899|GO:0006351
Mtr5g0329 1520 Gene3D RNA polymerase Rpb1, domain 3 492 638 IPR042102 -
Mtr5g0329 1520 CDD RNAP_IV_RPD1_N 25 861 IPR040403 -
Mtr5g0329 1520 MobiDBLite consensus disorder prediction 1476 1493 - -
Mtr5g0329 1520 Pfam RNA polymerase Rpb1, domain 3 488 636 IPR007066 GO:0003677|GO:0003899|GO:0006351
Mtr5g0329 1520 Gene3D - 1357 1448 - -
Mtr5g0329 1520 PANTHER DNA-DIRECTED RNA POLYMERASE 4 1370 IPR045867 GO:0003899|GO:0006351
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0329 Mtr-Chr5 3076507 3091108 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0329 K16250 - gmx:100796185 2176.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0329 5 3076507 3091108 Mtr5g0329 5 3076507 3091108 ECH