Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0294 ATGAGGCAGATGAAGCCGTTGGAGTTGTTTCACGATTTGGTCAAAACAACAAAGAACGAACGTGGAAGGTTGATGGGTTTAGATGTCGGTGATAAATATGTTGGTCTCGCTCTTTCTGATTTTGATAACAAAGTTGCTTCTCCTTTCAGTGTTCTCGTCAGGAAGAAGAGTAACGCTAGTTTAATGGCTGCTGATTTTAAGAGTCTGATCTCTAAATATTCCTTGAAGGGTCTTGTTATTGGCGTCCCTTTTGAATATAATCTGGTTTCTCCTGATGCTGTGCAAGTGAAGGTCCTCATTGATAACCTCCGTAGAACAAACATGCTTGAAGGTCTAAAGTATACATATTGGAATGAGTGCTTCACATCAAAGAATGTGGAGTTATTCTTAAAGCCTTTGAACTTCAAAAATGCAGTTCAGTCTAAAACTATGCTAGACAAGTTTGCTGCTGTAGGAATACTTCAAGGGTACATGGACTATGCCAACAGAAAAGCAAAGCAGAGAGCACTGGAGTAA 516 0.3973 MRQMKPLELFHDLVKTTKNERGRLMGLDVGDKYVGLALSDFDNKVASPFSVLVRKKSNASLMAADFKSLISKYSLKGLVIGVPFEYNLVSPDAVQVKVLIDNLRRTNMLEGLKYTYWNECFTSKNVELFLKPLNFKNAVQSKTMLDKFAAVGILQGYMDYANRKAKQRALE* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0294 171 SMART rnase_8s 22 126 IPR006641 GO:0006139
Mtr5g0294 171 Gene3D - 22 169 IPR037027 GO:0006139
Mtr5g0294 171 SUPERFAMILY Ribonuclease H-like 22 161 IPR012337 -
Mtr5g0294 171 PANTHER POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN 1 167 - -
Mtr5g0294 171 CDD YqgF 24 159 IPR005227 GO:0006364
Mtr5g0294 171 Hamap Putative pre-16S rRNA nuclease [yqgF]. 22 162 IPR005227 GO:0006364
Mtr5g0294 171 Pfam Holliday junction resolvase 23 159 IPR005227 GO:0006364
Mtr5g0294 171 PANTHER POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN 1 167 IPR005227 GO:0006364
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0294 Mtr-Chr5 2749956 2753314 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0294 - - lja:Lj0g3v0306549.1 256.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0294 5 2749956 2753314 Mtr5g0294 5 2749956 2753314 ECH