Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0276 ATGTCTTCATCTTCTCTAACAGCATCTTCTTACTCCTTCCCATTCACTACATCCCTTAAATCATCCCACCCAATTCCCTTATCTTGTTCTTTTCCTCTCAAACACCATACCCTCCATCTCAAATCATCGCCATCACTTTTTGTCTCACCTTCAGGAGCTGCAACACCCACTACCTCAATTGAAATCGATAAATCTCCAATCTCCGCTACTCCTTCAAGGGTTCTTCCTTTTCGGGTTGGTCATGGTTTTGACCTTCATCGATTGGAACCTGGTTATCCTTTAATTATTGGTGGAATTAATATACCTCATGATAGAGGTTGTGAGGCTCATTCTGATGGGGATGTTCTGCTTCACTGCGTGGTTGATGCAATTTTAGGGGCTTTAGGTCTCCCTGATATAGGACAGATTTTTCCTGATTCTGATCCTAAGTGGAAGGGTTGCGATTCTTCGGTGTTTGTCCATGAATCTGTCAGACTTATGCATGAGGCAGGTTATGATATTGGAAATTTAGATGCAACGTTGATACTTCAGAGGCCGAAACTAAGCCCGCACAAGGATGCTATCAAGGCCAACTTATCTGCACTGCTTGGAGTTGACGCTTCTGTGGTAAATATAAAGGCAAAAACTCATGAAAAGGTTGACAGCCTTGGAGAAAATAGAAGTATAGCGGCTCACACAGTTGTTCTTCTAATGAAGAAATGA 702 0.4231 MSSSSLTASSYSFPFTTSLKSSHPIPLSCSFPLKHHTLHLKSSPSLFVSPSGAATPTTSIEIDKSPISATPSRVLPFRVGHGFDLHRLEPGYPLIIGGINIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGCDSSVFVHESVRLMHEAGYDIGNLDATLILQRPKLSPHKDAIKANLSALLGVDASVVNIKAKTHEKVDSLGENRSIAAHTVVLLMKK* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0276 233 Pfam YgbB family 77 230 IPR003526 GO:0008685|GO:0016114
Mtr5g0276 233 Gene3D - 74 233 IPR036571 GO:0008685|GO:0016114
Mtr5g0276 233 PANTHER 2-C-METHYL-D-ERYTHRITOL 2,4-CYCLODIPHOSPHATE SYNTHASE 17 233 - -
Mtr5g0276 233 SUPERFAMILY IpsF-like 76 232 IPR036571 GO:0008685|GO:0016114
Mtr5g0276 233 CDD MECDP_synthase 78 230 IPR003526 GO:0008685|GO:0016114
Mtr5g0276 233 ProSitePatterns 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase signature. 111 126 IPR020555 GO:0008685
Mtr5g0276 233 PANTHER 2-C-METHYL-D-ERYTHRITOL 2,4-CYCLODIPHOSPHATE SYNTHASE, CHLOROPLASTIC 17 233 IPR003526 GO:0008685|GO:0016114
Mtr5g0276 233 TIGRFAM ispF: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 78 232 IPR003526 GO:0008685|GO:0016114
Mtr5g0276 233 Hamap 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [ispF]. 77 232 IPR003526 GO:0008685|GO:0016114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0276 K01770 - gmx:100306378 387.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0276 5 2590296 2594886 Mtr5g0276 5 2590296 2594886 ECH