Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0273 ATGGGGTGCAGTTTGTTGATAAGTGGTTTAATCTTGTGGTTTGCCATGAGTAGTAAGAATAATGGTATATTAGCAATAATGGATGAGGAATTAATTAGTAAAAGTTCCTCATCAAGTTACAACTATGCAGATGCTCTTGGCAAAGCAATCTTGTTTTTTGAAGGACAACGCTCAGGGAAATTGCCTAAAGACCAAAGAGTGAAGTGGAGGGGAGATTCAGCACTCTCTGATGGCAAAACTCAAAATGTGAATTTGGTTGGAGGATACTATGATGCTGGTGATAATGTAAAGTTTGGATGGCCAATGTCATTTACAGTCAGCTTATTGAGTTGGGCTGCTGTTGAATATGAAAGTGAGATTTCTTCAGTTAACCAGATTGGTTATCTCCGCCGTGCTATTCGTTGGGGTACAAATTTCATACTTCAATCTCACACTTCTCCAATCACGCTCTTCACACAGGTTGGAGAAGGAAACGCTGATCATAATTGTTGGGAGCGTCCAGAAGACATGGATACTCCAAGAACACTTTACAAGATTGATGCTAATTCCCCTGGAACTGAGGCTGCAGCTGAGGCTGCTGCTGCACTTTCAGCTGCTTCAATTGTCTTTAAGAAAAAAGATACCAAATATTCGTCGAAGCTATTAAGACATTCAAAATCTTTGTTTGATTTTGCTGACAAGTATAGAGGCACCTACACAGGTTCTTGTCCATTCTACTGCTCGTACTCTGGTTACCAAGATGAACTATTATGGGCTGCTGCTTGGTTATACAAGGCCAGTGGAGAAAGCAAGTACTTGAAGTACATCACAGATAACCAAGGTTGGAATCAGGCAGCGTCTGAGTTCAGCTGGGATAACAAATTTGTTGGAGTTCAAACATTACTAACACAGGAATTCTATGGTGGGAAGAAGGACTTAGCAAAGATTCATAGTGATGGTGAATCATTTATATGTGCTTTGATGCAAGGAAGTTACTCTCTACAGATTAAAAAAACACCTGGTGGACTTTTGTATACTAGAGATAGTAATAATTTGCAATACACCACGACCTCAACCATGGTACTATTCATTTTCTCCAAAATCCTAAACAAAAATAATATTGATGGAATTCATTGTGGCTCTACCAATTTCACCTCCTCTGAAATTAAAGCCTTTGCAAAATCACAGGTGGACTACATACTAGGTAACAATCCCATGAAGATGTCATACATGGTGGGATATGGAAGTAAATATCCAAAGCAATTACATCACAGAGGTTCTTCCATCCCTTCAATCAAAGTTCACCAGACCAAAGTGGGTTGCAATGATGGTTACACAGATTATTTCTATTCCTCTAATCCAAATCCTAATATTCATGTGGGTGCTATAGTTGGAGGCCCTGATTTTAATGACCAATTTAATGATGCAAGATCTGATTACTCTCATTCTGAACCTACTACTTATATGAATGCTGCTTTCATAGGTTCTGTCGCAGCTTTGATTGGCGAAATTAAAACCGGGACTATGTAG 1509 0.3917 MGCSLLISGLILWFAMSSKNNGILAIMDEELISKSSSSSYNYADALGKAILFFEGQRSGKLPKDQRVKWRGDSALSDGKTQNVNLVGGYYDAGDNVKFGWPMSFTVSLLSWAAVEYESEISSVNQIGYLRRAIRWGTNFILQSHTSPITLFTQVGEGNADHNCWERPEDMDTPRTLYKIDANSPGTEAAAEAAAALSAASIVFKKKDTKYSSKLLRHSKSLFDFADKYRGTYTGSCPFYCSYSGYQDELLWAAAWLYKASGESKYLKYITDNQGWNQAASEFSWDNKFVGVQTLLTQEFYGGKKDLAKIHSDGESFICALMQGSYSLQIKKTPGGLLYTRDSNNLQYTTTSTMVLFIFSKILNKNNIDGIHCGSTNFTSSEIKAFAKSQVDYILGNNPMKMSYMVGYGSKYPKQLHHRGSSIPSIKVHQTKVGCNDGYTDYFYSSNPNPNIHVGAIVGGPDFNDQFNDARSDYSHSEPTTYMNAAFIGSVAALIGEIKTGTM* 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0273 502 Pfam Glycosyl hydrolase family 9 42 488 IPR001701 GO:0004553|GO:0005975
Mtr5g0273 502 SUPERFAMILY Six-hairpin glycosidases 39 497 IPR008928 GO:0005975
Mtr5g0273 502 Gene3D - 37 502 IPR012341 GO:0005975
Mtr5g0273 502 PANTHER ENDO-1,4-BETA-GLUCANASE 2 497 - -
Mtr5g0273 502 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 392 418 IPR018221 -
Mtr5g0273 502 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 466 484 IPR033126 -
Mtr5g0273 502 PANTHER ENDOGLUCANASE 18-RELATED 2 497 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0273 Mtr-Chr5 2575880 2579210 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0273 42 494 Glycoside Hydrolase AT4G23560 70.861 0.0 658
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0273 - - cam:101489803 874.774
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0273 5 2575880 2579210 Mtr5g0273 5 2575880 2579210 ECH