Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0271 ATGGAAACGAACACTTCGTCGCCGTTGTCGACGCTACCTGAATCAGGTGCAATGACTGCTACCGCAAACCCAGTATCGCCGTCGCTAGTCAATTTGTACAGAATCACCAAAGTTCTCGAGCGTTTGGCCACACACTTTGTACCTGGCAACCGTAGCGATGCTTTCGAATTTTTTAACTTATGTCTCTCCCTCTCCAGAGGGATTGATTATGCACTTGCAAACGGGGAAGTTCCGCTGAAAGCTAATGAATTACCTATTTTGATGAAACAGGTTTATGGCATTTACTTTTCCTTTTCGACACAGATGTATCAAAGAAAGACCGATGATCATTCACAAGCAGCTGTGATGGTTTTGATGATCTCTGTGAAGAATGCCTGTGAAATTGGATGGTTCCGGGAGAATGATTCCAAAGAACTTTTAAATATTGCTGACAAGATAGGAAAAACCTACTGCACGCTGGGAAATGCAATTGCCGAACCTAATTCTTGCCATCCTGCAGTGTTAACTATAATGCAAAGGTACTATCCTAATATGGAATTGGGTCCAATAATCGTGTCAATTGAAGCCAAGCCTGGTTATGGAGCTTCTGCTGTTGACTTCCATATCACAAAGAATAATGTTCATTCAGATAAAAAAATTTGGTTATTGGTGGCCCAAATTGATAACATTGAGAAGTCTGCATGCCTCATCAGCCCTCAGCAAGTGAACATTCTCCTGAATGGAAAAGGAATTCATACAAGGACCAACTTTCGAATGGATCCTGGACCACAGATGCCCACCTGTGTGACTGGTATCCTTAAATTTGGGACAAATCTTCTTCAAGCTGTGGGTCAGTTCGATGGGCATTATATTATACTTGTTGCCTATATGAGTGTTGGATCCTTGCCTGCGCATCCAGTTCTTCCACCAGATTATGTTCAGCCTGCTGTATCTGTTGATGCAGATTCAGATATTATCGAGGGAGAATCAAAAATCTCTCTTAATTGTCCAATAAGCCGTACGCGTATCAAGACTCCTGTTAAAGGGCATTCATGCAAACATTTTCAGTGCTTTGACTTTGACAACTTCATTAAAATAAATTTTAAGAGGCCATCCTGGCGCTGCCCCCATTGCACTCGGCCTGTCTGCTATACAGATATTCGTCTTGACAGAAACATGATTGAGGTCCTGGAAAAAGTTGGTGAGAACATTGTGGAAGTGACTTTTGAAGCTGATGGATCGTGGAAGGTAGGCTCAGAAAATGATCATGACGTGAATAAGATACAGAATAAGGCCTACGATTGTGAAATGGAACAGACTGAACAACAAGAATCTACTTGCCCCCCTGATACTGTTTCCAATATTGTGGACCTCACCAACAATGATAATGATTTGGACATAATGTGCACTTATGAAACTGCAGATAGAAAGCCTTTTCAGGCTTCTGCTCCTACTGGCGTTCAAATAGAGGAGGACTTTTGGGCTGGTCTTTATATTGCCAACGGTGGGTCTGGTACCCCTACAGCTGTTGTTGAGATTCCTGAACTGGCTGATGCTGTTTCTCCTGTATTTAATCAAGAAGCAGAGGGTCATGACAATGTTCCTGCCATGCATAACCAGTTTTTAGGACAGAGTAATTTGACGCTGATGAATTATATGAATTCAAACGAGTATGGGAGGTCATCCTCGGCAGCGAGACTTATTCATAGGACTCCTACAGCTATTCAGGCCCTCCCAGTCCAATCTCAGACATTAGGACCACAGCAAAATCCAGCAACTAATTTGGATTCCTTGATAACCAGCAATCCGTCTGCTGCTCCTCATGTTTCTTTGTCCAACCCTGCCTCTGCAGATCCTTACAATGCCATTCTGAGTGATGCAGAAAGACAGCAACTTTTTTCTCGATCCGCATTGAATGTGCCTCCTGTCTTAGCAGCAACACAGAACCGAGTTCCAACAATTAATATTGCAGCCCCAACTCATAACCGAGTACTACCAGTTAATATGTCAGCTGCTACTCATAACCGAGCACCAAGTCAATTGCATAACCCACCATACAGAACAGATATGCTGAATGACTTCAGAAATTCACACCTTCAGCAAACTCTGAATGCCCATGCACACCAACCAATGCAACCATCAAATGCTCAACGATCTCACATCCAACAAGGGGGTTCACAAGCTTATGCAGCTGGAGCTACAGCAAGTAGCCAACAGGCCCGGGTTATGGCTTCATCACATGTTGCCAGACAAGGAGAGCAAAGAGGACCACCAGTACAGGCAGTTTCTAGTACTGATGAATTGTTCAATTCACAACCAGATCAGAATTGGCGTCCTACGCGAATGCGTGGAAGTCTTTCAGGTCAGCAACTTACTGAAGATGTTAGGCAGCGATTGATTATGCCATCATCACATCAAGTTCAAAGTTCAAGACCACAAGGTCCACAACCAGGCCGACCACTGGATGCGCTCATTGCTAACAATCGAAATGCTCAGAATCCTTCGAGACCGTGA 2493 0.4368 METNTSSPLSTLPESGAMTATANPVSPSLVNLYRITKVLERLATHFVPGNRSDAFEFFNLCLSLSRGIDYALANGEVPLKANELPILMKQVYGIYFSFSTQMYQRKTDDHSQAAVMVLMISVKNACEIGWFRENDSKELLNIADKIGKTYCTLGNAIAEPNSCHPAVLTIMQRYYPNMELGPIIVSIEAKPGYGASAVDFHITKNNVHSDKKIWLLVAQIDNIEKSACLISPQQVNILLNGKGIHTRTNFRMDPGPQMPTCVTGILKFGTNLLQAVGQFDGHYIILVAYMSVGSLPAHPVLPPDYVQPAVSVDADSDIIEGESKISLNCPISRTRIKTPVKGHSCKHFQCFDFDNFIKINFKRPSWRCPHCTRPVCYTDIRLDRNMIEVLEKVGENIVEVTFEADGSWKVGSENDHDVNKIQNKAYDCEMEQTEQQESTCPPDTVSNIVDLTNNDNDLDIMCTYETADRKPFQASAPTGVQIEEDFWAGLYIANGGSGTPTAVVEIPELADAVSPVFNQEAEGHDNVPAMHNQFLGQSNLTLMNYMNSNEYGRSSSAARLIHRTPTAIQALPVQSQTLGPQQNPATNLDSLITSNPSAAPHVSLSNPASADPYNAILSDAERQQLFSRSALNVPPVLAATQNRVPTINIAAPTHNRVLPVNMSAATHNRAPSQLHNPPYRTDMLNDFRNSHLQQTLNAHAHQPMQPSNAQRSHIQQGGSQAYAAGATASSQQARVMASSHVARQGEQRGPPVQAVSSTDELFNSQPDQNWRPTRMRGSLSGQQLTEDVRQRLIMPSSHQVQSSRPQGPQPGRPLDALIANNRNAQNPSRP* 831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0271 830 PANTHER E4 SUMO-PROTEIN LIGASE PIAL2-LIKE 37 473 - -
Mtr5g0271 830 MobiDBLite consensus disorder prediction 697 783 - -
Mtr5g0271 830 MobiDBLite consensus disorder prediction 1 20 - -
Mtr5g0271 830 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 303 410 IPR013083 -
Mtr5g0271 830 MobiDBLite consensus disorder prediction 795 830 - -
Mtr5g0271 830 MobiDBLite consensus disorder prediction 750 783 - -
Mtr5g0271 830 Pfam MIZ/SP-RING zinc finger 325 373 IPR004181 GO:0008270
Mtr5g0271 830 MobiDBLite consensus disorder prediction 697 738 - -
Mtr5g0271 830 ProSiteProfiles Zinc finger SP-RING-type profile. 314 395 IPR004181 GO:0008270
Mtr5g0271 830 CDD SP-RING_PIAS_like 326 371 - -
Mtr5g0271 830 PANTHER ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN 37 473 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0271 Mtr-Chr5 2548000 2558580 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0271 K04706 - gmx:100784204 844.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0271 5 2548000 2558580 Mtr5g0271 5 2548000 2558580 ECH