Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0252 ATGGATGAAGAATTAGTTGATGACAGAATTCAGTTAGAGGCTGTTGAGGATTCACAGCGTCAGAACAAAGACGACGTCCTCGTAAAATCCCAATATGATGGTAAAAATGTAGTTGAAGCAGCAGATACATCACAACATCAATATGAAACAGTTGAAGAATTAACAGTGAAAAGTTACAATGGTTTTAGTTTTGATATTGGTACTTCTACTACACAAGTTCAACATAAACATTGGCAAAATCTTTATCAGATTGGAAATAATTCAGGGAATGTGAATTCAATTAGTGATATTGGGTTGATTAATAGTGGGCCTGCGGCTACGTCTAGTGCTTGGGAGGATGTTGGATCCACCTCGTTTCCGGAGTTATTAGCTAGAAAATCGCATAGTGATGGTCAGAGTAATGTTGTTGAACATTTGGCGGCTGCGGAAAGTAAAGAGGGAGTAGGACCCGCAGGTGATGTTCGTCGAGGAATACGGACAAAGATGATATCCAAATCAGGGTTTGCTGAGTATTTTATTAAAAATACGTTGAAGAGTAAGGGTGTTGTACGTAAAGGTCCAGCTTCGGATCGCGTATATGTCCAACCTAGAGAGCAAAATCAGACAAAGACGGGCGGTGATGCAAATCAGAATTGGGGTAAGATTGGCGTTGGCGCATATAAGAATCAGATGAAGACGAGCATTGATACAGAGCAGAAACAAATAAAGACTGGTACTGGTGCTCAGTCAAACTGTAATGTATCAGTGAACCGTGGTTCCAAGACTGCAAAGTTTCCGATTCACAGTGATGCTGCAGTGCCTAAATCTAGCATGACTGAATGTGACGGTGTAACATTGAGAGAATGGTTAAAATCTGGCCAGCGCAAATCAGGCAAAGTGGAAAGTTTGAATATATTTAGGAAAATTGTGGATTTGGTGGATGACTCGCACTCTCGGGGATTTGCGTTGCATAACCTTTGTCCATCTTACATTAAATTTCTACCATCGAATCAGGTCATGTACATTGGGTTACCTACTCAAAAACAGACGGCAGGTAAAAGGGTGTCTGAGCAAGTAACATCTTCTGTTGATATGGGGTCCAAGAAACAAAAATTTGACGAGAGTGGGAGGGTTACTGGGAGTGACTTGTGTCCTGAGACTGCTAATCATCATGAAGTTCAAACTCCTTCAGTTGGATCACAAGATTATCGTAATGGATATGAGGAAGATAACCAATTTTCTGTGTATAATTTTGGGAGAATGTCTAGCATCCCTCGTGTATCTAATTCAGGTCAATTGTCATCTACTTGTAATTCTTTATGTGAAAGATGGGAAAATAAGTGGTATGCGAGTCCTGAGGGAGGTTGCACAACATCATCAAACATCTACTGCCTCGGTGTCCTCCTTTTTGAGTTACTAGGTCATTTTGACTCTGAAAGGGCGCATATTGCAGCAATGTCTGATCTTCATCATAGGATTCTTCCTCCAGCTTTCCTATCAGAAAATCCTAAGGAAGCTGGATTTTGTCTCTGGCTGCTGCATCCTGAACCATCATCACGTCCAACAACAGGGGAAATCCTACAATCTGAAGTGATTAATGGATTACAGGAGTTGTGTAATGAGGAATTGTCATCATGTATAGACCAAGAAGATGCAGAATCAGAATTGTTATTGCATTTCCTCATCTCATCGAAAGAGCAGAAGCAGGGTGATGCCTCCAAGTTGGTTGAACAATTAGAGTGCTTGGAATCAGATATAGGAGAGGCAGAGAGGAGGCATGGCTTAAGAAAATCCTTGGTTTCATCTGGCTGGCAGAACAATTACTCTTGTCAGAAAGTGATTTCGCCTCTTCAAAAGGAATTTTTGAGTGTAGAAAGACCGCCCACAGTGTCCCCAATCTCCAATACAAATGAACTGAGATTGATGAAAAATATAGGCCATCTTGAAAGTGCTTACTTTTCCATGAGATCCAAAGTTCAGATTTCCGAAACAGATGCCACAGATCACCCAGATAAAGATATACTAAGAACTCGCGAGAACTGGTCTGTGACCCAAAAAGGCGAGGAGCAGCATAATAGTAAAGATGCTTTAGGAACCTTCTTTGATGGTTTGTGCAAGTATGCACGTTACAGCAAGCTTGAAGTGCGGGGTATACTAAGAAATGCAGATTTTAACAATCCTGCAAATGTTATATGCTCTCTGAGCTTTGACCGGGATGAAGATTACTTTGCTTCTGCTGGGATATCTAAGAAAATAAAAATCTTTGACTTCAATACACTTTGCAATGACTCTGTTGATATCCATTATCCTGCTGTTGAGATGTCAAACAGATCAAAGCTTAGCTGTGTTTGCTGGAATAGCTATATTAAGAACTATCTTGCTTCTACAGACTACGACGGTGTAGTGAAGTTATGGGATGCTAGTACAGGTCAAGAATTTTCTCAATACAGTGAACATGAAAAGAGGGCTTGGTCTGTTGACTTTTCTCCGGTATGCCCTACAAAATTTGCCAGTGGAAGTGATGATTGTACTGTCAAGCTGTGGAGCATTAGTGAGAGAAACTCTTTGGGCACAATCCGGAATGTTGCTAATGTCTGCTGTGTTCAATTTTCTGCTCATTCCTCTCATTTGCTGGCCTTTGGATCTGCGAATTACTCAACTTACTGTTATGATCTTCGCAATCTAAGAAGTCCCTGGTGCGTATTGGCTGGCCATCGTAAAGCGGTAAGCTATGTCAAATTCTTAGACTCTGAAACACTTGTTTCTGCATCTACTGATAATTCATTGAAGATCTGGGATCTCAATAAAACCTCTTCGGTTGGTACATCCACCAGTGCTCGCAGCCTAACCCTGTCTGGACATACTAATGAAAAGAATTTTGTGGGTTTGTCTGTTGCTGATGGATATATTGCATGCGGTTCAGAATCAAACGAGGTTTACACCTACTATAAGTCGCTTCCCATGCCAATTACTTCACACAAGTTTGGATCTATTGATCCCATCTCTGGTAAAGAGACTGATGATGACCATGGTCAGTTTGTTTCAAGTGTGTGCTGGAGAGGGAAATCAAACACGCTTCTTGCTGCCAATTCAAGTGGATGTATAAAAGTGTTACAGATGGTTTAA 3105 0.41 MDEELVDDRIQLEAVEDSQRQNKDDVLVKSQYDGKNVVEAADTSQHQYETVEELTVKSYNGFSFDIGTSTTQVQHKHWQNLYQIGNNSGNVNSISDIGLINSGPAATSSAWEDVGSTSFPELLARKSHSDGQSNVVEHLAAAESKEGVGPAGDVRRGIRTKMISKSGFAEYFIKNTLKSKGVVRKGPASDRVYVQPREQNQTKTGGDANQNWGKIGVGAYKNQMKTSIDTEQKQIKTGTGAQSNCNVSVNRGSKTAKFPIHSDAAVPKSSMTECDGVTLREWLKSGQRKSGKVESLNIFRKIVDLVDDSHSRGFALHNLCPSYIKFLPSNQVMYIGLPTQKQTAGKRVSEQVTSSVDMGSKKQKFDESGRVTGSDLCPETANHHEVQTPSVGSQDYRNGYEEDNQFSVYNFGRMSSIPRVSNSGQLSSTCNSLCERWENKWYASPEGGCTTSSNIYCLGVLLFELLGHFDSERAHIAAMSDLHHRILPPAFLSENPKEAGFCLWLLHPEPSSRPTTGEILQSEVINGLQELCNEELSSCIDQEDAESELLLHFLISSKEQKQGDASKLVEQLECLESDIGEAERRHGLRKSLVSSGWQNNYSCQKVISPLQKEFLSVERPPTVSPISNTNELRLMKNIGHLESAYFSMRSKVQISETDATDHPDKDILRTRENWSVTQKGEEQHNSKDALGTFFDGLCKYARYSKLEVRGILRNADFNNPANVICSLSFDRDEDYFASAGISKKIKIFDFNTLCNDSVDIHYPAVEMSNRSKLSCVCWNSYIKNYLASTDYDGVVKLWDASTGQEFSQYSEHEKRAWSVDFSPVCPTKFASGSDDCTVKLWSISERNSLGTIRNVANVCCVQFSAHSSHLLAFGSANYSTYCYDLRNLRSPWCVLAGHRKAVSYVKFLDSETLVSASTDNSLKIWDLNKTSSVGTSTSARSLTLSGHTNEKNFVGLSVADGYIACGSESNEVYTYYKSLPMPITSHKFGSIDPISGKETDDDHGQFVSSVCWRGKSNTLLAANSSGCIKVLQMV* 1035
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0252 1034 ProSiteProfiles Trp-Asp (WD) repeats profile. 809 851 IPR001680 GO:0005515
Mtr5g0252 1034 ProSiteProfiles Trp-Asp (WD) repeats profile. 766 808 IPR001680 GO:0005515
Mtr5g0252 1034 PANTHER PROTEIN SPA1-RELATED 2 35 1034 - -
Mtr5g0252 1034 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 895 928 - -
Mtr5g0252 1034 ProSitePatterns Trp-Asp (WD) repeats signature. 786 800 IPR019775 -
Mtr5g0252 1034 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 809 844 - -
Mtr5g0252 1034 Gene3D Transferase(Phosphotransferase) domain 1 274 535 - -
Mtr5g0252 1034 ProSiteProfiles Trp-Asp (WD) repeats profile. 895 935 IPR001680 GO:0005515
Mtr5g0252 1034 ProSitePatterns Trp-Asp (WD) repeats signature. 913 927 IPR019775 -
Mtr5g0252 1034 PANTHER PROTEIN SPA1-RELATED 2 35 1034 IPR044630 GO:0009640
Mtr5g0252 1034 MobiDBLite consensus disorder prediction 1 21 - -
Mtr5g0252 1034 MobiDBLite consensus disorder prediction 381 396 - -
Mtr5g0252 1034 PRINTS G protein beta WD-40 repeat signature 786 800 IPR020472 -
Mtr5g0252 1034 PRINTS G protein beta WD-40 repeat signature 829 843 IPR020472 -
Mtr5g0252 1034 PRINTS G protein beta WD-40 repeat signature 913 927 IPR020472 -
Mtr5g0252 1034 SMART WD40_4 802 842 IPR001680 GO:0005515
Mtr5g0252 1034 SMART WD40_4 710 749 IPR001680 GO:0005515
Mtr5g0252 1034 SMART WD40_4 888 926 IPR001680 GO:0005515
Mtr5g0252 1034 SMART WD40_4 937 976 IPR001680 GO:0005515
Mtr5g0252 1034 SMART WD40_4 759 799 IPR001680 GO:0005515
Mtr5g0252 1034 SMART WD40_4 845 884 IPR001680 GO:0005515
Mtr5g0252 1034 SMART WD40_4 993 1032 IPR001680 GO:0005515
Mtr5g0252 1034 Gene3D - 693 1034 IPR015943 GO:0005515
Mtr5g0252 1034 SUPERFAMILY Protein kinase-like (PK-like) 271 532 IPR011009 -
Mtr5g0252 1034 MobiDBLite consensus disorder prediction 351 396 - -
Mtr5g0252 1034 Pfam WD domain, G-beta repeat 804 842 IPR001680 GO:0005515
Mtr5g0252 1034 Pfam WD domain, G-beta repeat 894 926 IPR001680 GO:0005515
Mtr5g0252 1034 SUPERFAMILY WD40 repeat-like 718 1031 IPR036322 GO:0005515
Mtr5g0252 1034 Coils Coil 558 585 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0252 Mtr-Chr5 2316291 2325881 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0252 829 975 Miscellaneous Gene Families AT5G08390 28.859 9.33e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0252 K16240 - gmx:100778303 1524.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0252 5 2316291 2325881 Mtr5g0252 5 2316291 2325881 ECH